RNA id: AMCG00011473


Basic Information

Item Value
RNA id AMCG00011473
length 3614
RNA type mRNA
GC content 0.50
exon number 16
gene id AMCG00011473
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 26189132 ~ 26199349 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAcgcattaaataaatgtattaattaagtaGAGTCGCCGCATATGTTGTTGCGGAGATTGTAATTTGATCCCGGCGGTAGTTGGACAGCTACATGTGGGTCCTTTCAGCGGTGCATGGTGCAACCCATGTGTGTTCGATAGTTCCAGAACGTAGAGGTACGCCACGGCTGGTGCATAGACTGTCTGTCCGGGGCCAAATTTGACGCGACCTGCAAAATTACCTGCTCTTTTCCATTGAATCCATCTTCCTGCTGGGGgattaataaaaacagcattcGCAGTCCATAAAGTGCGATTGACGTTTATATTGTGCTCCACATTTAACACCGCGAAGCGATATCCTTGAGCCGGCCTTCGTTTATCTGACATAACCAGATCCGCCGTCATGATGCTGAATGTGACCCGAGTTGCTTCAAGATCACTCCTGCACTCCACAGCTTACACCCGGAGCGCGTCTTCGCTCGCCAGAAAGGGATGCTGGAATGGACTGAGTCAAGATGCCCTGCGAACAGTGTCCAGACGTGACTATGCGTCGGAGGCCATTAAAGGGTCAGTCATTGGAATCGATCTGGGCACTACCAACTCCTGTGTGGCGGTGATGGAAGGAAAGCAGGCAAAGGTGCTTGAGAATGCCGAGGGCGCGCGGACCACCCCCTCCGTTGTGGCCTTCAGTGCGGATGGAGAGAGGCTGGTGGGGATGCCAGCCAAGCGCCAGGCTGTCACCAACCCCAACAACACCCTGTACGCCACCAAACGTCTGATTGGCCGACGCTACGATGACAAAGAAGTCCAGAAAGACTtGAAAAACGTGCCCTATAAGATTGTCCGTGCATCCAATGGCGACGCCTGGGTGGAGGCTCATGGGAAAATGTACTCCCCCAGCCAGGTGGGGGCATTCGTCCTTATGAAAATGAAGGAGACCGCGGaAAACTACATGGGCCACAGTGTGAAGAATGCTGTGATCACAGTGCCTGCTTACTTCAATGACTCTCAGAGACAGGCCACAAAGGACGCCGGCCAGATCGCAGGGCTCAACGTGCTGCGTGTCATCAACGAGCCCACAGCCGCCGCCCTGGCCTACGGACTGGACAAGTCCCAGGACAAAGTCATTGCAGTGTATGACCTTGGGGGTGGCACCTTTGATATCTCTGTCCTGGAGATCCAGAAGGGCGTGTTTGAGGTGAAATCCACCAATGGGGACACCTTCCTCGGAGGGGAGGACTTCGACCAGGCTCTACTGAATCATATCGTCAAAGAGTTCAAGAGAGAGTCTGGTGTGGACCTGACTAAAGACAGTATGGCCTTGCAGAGGGTGAGGGAGGCCTCTGAGAAAGCCAAGTGTGAGCTGTCCTCCTCCCTGCAGACTGACATCAACCTGCCCTACCTGACGATGGATGCCTCCGGCCCCAAGCACTTGAACATGAAGCTGACCCGCTCGCAGTTCGAGGGCATCGTGGCCGACCTGATCCGCCGCACCATGGCCCCCTGTCAGAAGGCCATGCAGGACGCAGAAGTCGCCAAGAGCGACATCGGGGAGGTGCTGCTGGTGGGAGGCATGAGCCGCATGCCCAAGGTGCAGCAGACCGTGCAGGACCTGTTTGGTCGTGCCCCCAGCAAGTCTGTGAACCCAGACGAGGCCGTGGCCATCGGGGCCGCCATCCAGGGGGGTGTGCTAGCCGGCGATGTCACGGACGTGCTGCTGCTGGACGTCACACCCCTGTCACTGGGTATCGAGACCCTGGGGGGAGTCTTCACCAAGCTCATCAACCGCAACACCACCATCCCTACCAAGAAGAGCCAGGTCTTCTCCACTGCTGCGGATGGACAGACCCAGGTGGAGATTAAGGTGTgccagggggagagagagatggcttCAGACAACAAGGTCTTGGGACAGTTCACATTGGTGGGGATCCCCCCTGCTCCTAGAGGAGTGCCCCAGATTGAGGTGACCTTCGACATTGATGCCAATGGAATTGTACACGTGTCTGCCAAGGACAAGGGCACGGGCCGTGAGCAACAGACGGAGGGGATTGTCCACGACACGGAGTCCAAGATGGAGGAGTTCAAGGATCAGCTCCCTGCAGATGAGTGCAACAAACTGAAAGAAGAGATCGCCAAGGTGAGGGAGCTGCTGGCACGGAAGGACAGTGAGACGGGGGAGAACATAAAGCAGGCCTCCAGCAACCTGCAGCAGGCCTCGCTCAAGCTGTTCGAGATGGCGTACAAGAAGATGGCGTCGGAGAGGGAaggcagcagcagcggcggaAGTGGTGAcagcagctccagctccggcagtgaggagaagaaggagggcAAGCAGTAAAGCCTGGCTTGTTGGGTTGTCACGCAGGCAATGGGACTGGAGGGCTTGGGGAGCGTAGACCTGATGCTATCCTGAGCGGCTAATGCACACGAGTCATTTTCACCTACTGTGTTTTTGCAGTATTCAATACAACATGAtggttgtttcctttttttgttttcattgtaatttaatggttcaaaactaaaaagtgtatcttgtcttcatttttaaagcaatttgtttGTGAAGTAGTAAAATGTCTGGTAATTATACAAACGACTTGGGAGTTCCCTTTTGGGTTTACAATTGGACAGACCGTGCACCTCCTGTCTGGGCTTGGCACTGGAAGAAGAATGGAAGTTGTGGCTCTACTTCCTGACCAGCAAGACGACAGATGACAAAAGTGTATGATTGTGCCACTGATTTGAAGTTTGACTTGGAAATAAGATAATCTTGATTGTTTCTATAAAGTCTAAAGTGTTCAATGTCAGCTTTAACTTTGGTGTGTGGTGGCTGGCCCCAATGTACAGAGGAAGGCAGGTCAGATGTATTTAATAGAAAACTGAGCCATGTTCATTGGACTACTGTAAAAACCATGACCTGTGATCAGAAGTATGGCTTAATCTGAATTGCTACTACTGTTAGGGGGGTATACTGTCCATTTTATTatcctgtttttgttgtgttcccTGTGCCTGTTTAGAGAAAGACCAATGTTACCTAATGAAGTCAAGATCAGACTGGAGGTCATTGTCTGTCCAGTATCATGTATATTTTCCATCTTTATAAGCACATGATTACAATCTAGGTCTCTTTAACAATTCAGTGCCAGTCTGTTTGATCTTGTTATAGAAGTGGGAAGAATATCACTAATGTCTTGAAAATATCAACTAAATGACCTTATTTAGTTTTAAGCAGAGCTGAGGTGATAGGTAGATGCATATAAGCTGCCTTCCTGTCTTTGATTTGTAattcacaattacattttctgtccaGTTTTCTTGCCATAACTCTAACTGATAATCAAAACCATTTTCTGGGTAATAAGCAATGCCTCCTTAGTGAAGCTGTTAACAAAATCACAATTATATAAGTGAGCTGACATCAGCTGGACTAGATTCTACTGAAACATTTTTCCGTCTCTGGTTTGGAAGGAAAAGCTTCCCAGTATGAATTGGTCTGATAGGGTGCCTGGGGAATTGGGGTTAATTTAAACTTAACCAAGAGTTGTCAGTGAGCTGGATTGAGTTTCTGTACACTGATGGTCTAgtcatgtatttacttttaatttcaggagggtgggggg

Function

GO:

id name namespace
GO:0030097 hemopoiesis biological_process
GO:0006457 protein folding biological_process
GO:0031101 fin regeneration biological_process
GO:0005524 ATP binding molecular_function
GO:0051082 unfolded protein binding molecular_function

KEGG:

id description
K04043 dnaK, HSPA9; molecular chaperone DnaK

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU133839 lncRNA upstream 300294 25882692 ~ 25888838 (+) True G107004
TU133824 lncRNA upstream 393520 25795413 ~ 25795612 (+) True G106994
TU133796 lncRNA upstream 468546 25698252 ~ 25720586 (+) True G106973
TU133788 lncRNA upstream 511713 25674416 ~ 25677419 (+) True G106966
TU133783 lncRNA upstream 521350 25666124 ~ 25667782 (+) True G106961
TU133936 lncRNA downstream 601 26199950 ~ 26202619 (+) True G107084
TU133952 lncRNA downstream 78025 26277374 ~ 26292447 (+) True G107098
TU134002 lncRNA downstream 188399 26387748 ~ 26387984 (+) True G107126
TU134004 lncRNA downstream 247853 26447202 ~ 26451575 (+) True G107128
TU134125 lncRNA downstream 640092 26839441 ~ 26842778 (+) False AMCG00011488
AMCG00011467 mRNA upstream 53354 26127315 ~ 26135778 (+) True AMCG00011467
AMCG00011468 mRNA upstream 76278 26081951 ~ 26112854 (+) True AMCG00011468
AMCG00011466 mRNA upstream 153764 26034232 ~ 26035368 (+) True AMCG00011466
AMCG00011464 mRNA upstream 177238 26005894 ~ 26011894 (+) True AMCG00011464
AMCG00011462 mRNA upstream 272459 25913524 ~ 25916673 (+) True AMCG00011462
AMCG00011471 mRNA downstream 41024 26240373 ~ 26242027 (+) True AMCG00011471
AMCG00011472 mRNA downstream 46578 26245927 ~ 26264527 (+) True AMCG00011472
AMCG00011476 mRNA downstream 159516 26358865 ~ 26360640 (+) False AMCG00011476
AMCG00011483 mRNA downstream 188945 26388294 ~ 26397982 (+) True AMCG00011483
AMCG00011478 mRNA downstream 202616 26401965 ~ 26409373 (+) True AMCG00011478
TU133489 other upstream 2436130 23748674 ~ 23753002 (+) True G106711
TU133383 other upstream 2832573 23356062 ~ 23356559 (+) True G106618
TU133378 other upstream 2847367 23341308 ~ 23341765 (+) True G106613
TU132939 other upstream 5821909 20361208 ~ 20367223 (+) True G106242
TU132823 other upstream 5850045 20296011 ~ 20339087 (+) False AMCG00011365
TU133992 other downstream 156818 26356167 ~ 26360775 (+) True AMCG00011476
TU134100 other downstream 571089 26770438 ~ 26771214 (+) True G107202
TU134126 other downstream 618703 26818052 ~ 26830055 (+) False AMCG00011488
TU134311 other downstream 1512857 27712206 ~ 27727867 (+) True G107394
TU134734 other downstream 3498252 29697601 ~ 29699419 (+) True G107741

Expression Profile