RNA id: AMCG00011475


Basic Information

Item Value
RNA id AMCG00011475
length 828
RNA type mRNA
GC content 0.49
exon number 7
gene id AMCG00011475
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 26320021 ~ 26334761 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGTGTGACGGAGCCCTGGTGATTGATGCATGTGTATCGTTTTGCAGGTGGTATGGCCAAGAGAAGGATTACAATGTCCTAGTGATGGATCTCCTGGGACCCAGTCTGGAGGACCTCTTTAACTTCTGTTCACGCAGGTTTACAATGAAAACCGTACTAATGTTAGCAGACCAGATGATCAGCAGAATCGAATATGTGCACACAAAGAATTTCATCCACCGAGATATCAAGCCAGACAACTTTTTAATGGGTATTGGGCGTCACTGTAATAAGttgTTTCTTATTGACTTTGGTTTGGCCAAAAAATACCGGGACAACAGGACACGACAACACATACCTTACAGAGAGGACAAAAACCTCACAGGCACAGCACGCTACGCCAGCATCAATGCGCACTTGGGCATCGAGCAAAGTCGCCGAGATGACATGGAGTCGTTAGGATACGTGCTGATGTACTTCAATAGAACCAGCCTGCCCTGGCAGGGTCTAAAGGCTGCCACAAAGAAACAGAAGTATGAGAAGATTAGTGAGAAGAAGATGTCCACTCCTGTTGAAGTTTTGTGTAAGGGTTTCCCAGCAGAGTTTGCCATGTATCTGAACTACTGCCGTGGGCTGCGGTTCGAGGAGGCGCCAGACTACATGTACCTGCGACAGCTCTTCCGCATTCTCTTCAGGACCCTGAATCACCAGTACGACTACACGTTTGACTGGACCATGCTGAAGCAGAAAGCAGCCCAGCAAGCTGCCTCCTCGGGGGGGCAGGGCCAGCAGGCACAAACCCCCACAGGCAAGCAAACTGACAAACCCAAGAGTAACATGAAAGGTTAG

Function

GO:

id name namespace
GO:0018105 peptidyl-serine phosphorylation biological_process
GO:0007507 heart development biological_process
GO:0005730 nucleolus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K08957 CSNK1A; casein kinase 1, alpha

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU133934 lncRNA downstream 122188 26196112 ~ 26197833 (-) True G107082
TU133901 lncRNA downstream 192256 26094805 ~ 26127765 (-) True G107057
TU133880 lncRNA downstream 301288 26017239 ~ 26018733 (-) False AMCG00011465
TU133879 lncRNA downstream 303341 26015984 ~ 26016680 (-) True G107038
TU133878 lncRNA downstream 307574 26009520 ~ 26012447 (-) True G107037
TU134043 lncRNA upstream 53451 26388212 ~ 26409375 (-) True G107167
TU134045 lncRNA upstream 53451 26388212 ~ 26398851 (-) False G107167
TU134049 lncRNA upstream 53451 26388212 ~ 26409375 (-) False G107167
TU134130 lncRNA upstream 498804 26833565 ~ 26833850 (-) True G107232
TU134131 lncRNA upstream 503406 26838167 ~ 26842786 (-) True G107233
AMCG00011474 mRNA downstream 124171 26191126 ~ 26195850 (-) True AMCG00011474
AMCG00011469 mRNA downstream 157143 26138966 ~ 26162878 (-) True AMCG00011469
AMCG00011470 mRNA downstream 200006 26113869 ~ 26120015 (-) True AMCG00011470
AMCG00011465 mRNA downstream 300621 26017176 ~ 26019400 (-) True AMCG00011465
AMCG00011463 mRNA downstream 421194 25877496 ~ 25898827 (-) True AMCG00011463
AMCG00011482 mRNA upstream 13827 26348588 ~ 26362055 (-) True AMCG00011482
AMCG00011480 mRNA upstream 27630 26362391 ~ 26368116 (-) True AMCG00011480
AMCG00011481 mRNA upstream 34560 26369321 ~ 26369867 (-) True AMCG00011481
AMCG00011479 mRNA upstream 35412 26370173 ~ 26377379 (-) True AMCG00011479
AMCG00011484 mRNA upstream 111819 26446580 ~ 26490473 (-) True AMCG00011484
TU133710 other downstream 1301689 25012205 ~ 25018332 (-) True AMCG00011445
TU133362 other downstream 3259055 23053316 ~ 23060966 (-) True AMCG00011409
TU132729 other downstream 6452119 19865614 ~ 19867902 (-) True AMCG00011356
TU132572 other downstream 6907006 19410368 ~ 19413015 (-) False G105970
TU132457 other downstream 7214752 19102293 ~ 19105269 (-) True G105890
TU134083 other upstream 172182 26506943 ~ 26516507 (-) True AMCG00011485
TU134703 other upstream 3290323 29625084 ~ 29625387 (-) True G107713

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00015728 False 2340 mRNA 0.43 10 NC_007125.7 38762977 ~ 38783567 (-)
grasscarp (Ctenopharyngodon idella) TU6611 True 2569 lncRNA 0.43 10 CI01000000 8996315 ~ 9016479 (-)
rainbow trout (Oncorhynchus mykiss) TU6611 True 234 lncRNA 0.50 1 NC_048565.1 6486319 ~ 6486552 (-)
eurasian perch (Perca fluviatilis) TU6611 True 343 lncRNA 0.30 1 NC_053112.1 16049326 ~ 16049668 (+)
mexican tetra (Astyanax mexicanus) TU6611 False 284 lncRNA 0.41 2 NC_035897.1 20384764 ~ 20385255 (+)