RNA id: AMCG00011477


Basic Information

Item Value
RNA id AMCG00011477
length 5252
RNA type mRNA
GC content 0.50
exon number 15
gene id AMCG00011477
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 26413301 ~ 26435458 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gcagggagagggaggacagAGCGAGGGTTTCCTTTTCTCCCGGTGTCTGCCGTGAGACGATGTGAAGAGCGGGGGGTGGCGGAGCACAGCAGGCGGGCATCGGGTTGCAATCACACGCCCGGCAGCGGCGCTCAATCTCGGccgctctcctctcctcccggAGCTGCATGGGACCGTGAGCGCAGTCGCAGGCGGGGGTGCATGGATCAGCGGGCCGGCGGCCACAGGGGGGTCTCATGCAGTAGGACGGGAACCATGGACGATGATGCAGGGAGCCGAAAGTCAAGCCCCCAACCGCCCTTGGAACCTGAGGAGGATGAGAGGGATGCTGGGAACTCCAGCTTTAACCACACCCACATGAAGAAGGCCTTCCGGCTGATGAATGAGCTGAGAAGTAAGAAGATGTTGTGTGACGTGCTGCTCGCCGCAGAGGACGTGGAGATCCCAGCGCACCGCGTGGTGCTGGCGTCCTGCAGCCCCTACTTCTATGCCATGTTTACAGGGGACATGAGTGAGAGCAAAGCCCAGCGAGTGGAGATCAAGGACGTGGATGGGCAGACACTCCGGAAGCTGGTGGACTACGTGTACACGGCTGAGATCGAGGTGACCGAGGACAATGTGCAGGTGCTCTTGCCAGCAGCCGGTTTGCTGCAGCTGATGGACGTTCGGCAGGTGTGCTGTGACTTCCTGCAGGCCCAGCTGCACCCCACCAACTGCCTGGGCATCCGTGGCTTTGCAGAcctgcacacctgcacacagCTGCTCAGCCAGGCGCACGCCTATGCAGAGCAGCACTTCCCCGAGGTGATGCTGGGCGAAGAGTTCCTGggcctctctctccagcaggTGTGCAGCCTCATCTCCAGTGACAAGCTGACGGTGCCTTCAGAGGAGAAGGTGTTTGAGGCCATGATTTCCTGGATCAAATATGACAAGGAGGCCCGTCTGGAGCACATGCCCAAGCTGATGGAACACGTCCGTCTGCCCCTGCTGCCTAGAGACTACCTGGTTCAGATTGTGGAGGAGGAGGCCCTGATCAAGAACAACAACACCTGCAAGGACTTCCTCATCGAGGCCATGAAGTACCACCTGCTGCCCATGGACCAGCGCCACCTCATGAAGAACTCCAGAACCCGCCCCCGCACGCCAATCAGCCTGCCCAAGGTGATGATCGTGGTGGGGGGCCAGGCACCTAAGGCCATTCGCAGTGTGGAATGCTACGATTTCCAGGACGACCGCTGGTACCAGGTGGCTGACCTGCCGTCCCGCCGCTGTCGAGCAGgtGTGGTGTACATGGCAGGCCGGGTGTACGCGGTGGGGGGGTTCAATGGGTCTCTGCGTGTGCGGACTGTGGATGTGTACGATGGGGGGAAAGACCAGTGGAGCTGCGTTCCCAGCATGCAGGAGCGGCGGAGCACGCTGGGGGCCGCTGTGCTGGGTGATCTTCTGTACGCGGTGGGAGGCTTTGACGGCAGCACAGGCCTGTGCTCGGTAGAGGCCTACAGTCACAAGTCCAACGAGTGGTTCTTCGTGGCTCCCATGAACACACGCAGGAGCAGCGTGGGGGTTGGCGTGGTGGACGGGAAGCTGTACGCGGTGGGCGGCTACGATGGAGCATCCCGGCAGTGTCTCAGCACTGTGGAGCAGTACAACCCTGTTTCCAACCAGTGGGCCTTTGTGGCCGACATGAGCACACGGCGCAGTGGGGCAGGTGTGGGGGTGCTGAGCGGGCAGCTGTACGCGGCGGGGGGGCACGACGGGCCCCTGGTGAGGAAGAGCGTAGAGGTGTACGACCCCCCCACCAACACCTGGAGACAAGTGTGCGACATGAACATGTGTCGCCGGAACGCAGGAGTGTGTGCTATCAATGGGCTGCTGTATGTGATCGGGGGGGACGATGGCTCCTGTAACCTGTCCTCGGTGGAGTATTACAACCCTGCTACGGACAAGTGGAGCCTCATCCCCACGAACATGAGCAATGGCAGGAGCTATGCAGGAGTATCAGTGATTGACAAGGTGTTATGACTAAGAGCCAGGCTCAGCAGGAAGGCCCGTCTGACCGAGAGTGACGAAGTGGCCTCCCTGCTGAccgagacagagacagagacttgTGAACCAGCAACAGCTTCAGGCCTGAATGGGCAGTGGACAGGGCACCCATAAGAGGACCCTTCCAGCCGAACGGCAAATGGGGCCATGGCTGACACAGCAGTGACCTttgaactgcagagagagagaggagagaaattGGTCAAAGCAAGCTACTGCCTTCTATGAGTCTGCTATCCTCAAACTTGCTGTTGGACATTCCTAGGTGGGGATATTAAGACTTGGCTGCCAAAACACCCCTCAGAGCATCAACAGAGGCGATCACTACTCTGGCTGCATGGGTTCGGGCAGTCCTATTGGTGTTGTTTTCAACATGGACGAGAGCGAGGATTGGCTGGGACACGATGACTGAATCTACAACTTTGGATGTACAAAGATGTAGGAAAATCAATGAATTtagaaatataacttttttgaaataacAAGTGAGTTAGTACAAAAAGATGACAAATTAGAGATGAAACAGTTCACTGAAGGAGATGGGAAGTAAAAGACTACATTGAGTCTGCAGTCTTTGTGGACGAGCTGTGCCAACTAAGAGCCTGCGGTCAGCAGAGACAGCAGAGACTCTCTGCCTGCGTACTACTGATCTGAGATGCACTGAATCACAAAGTGTCAATGGTTTTAGAAGATCTACtgagggaagaaaataaatccaaacaaaGGAACTCAAttaaaggtttttaaatgtcatagcCAGGATCTTATTCCCCCAAAGTGTGGCCTATGCTAAAACAAGCAGCCTCTCCGCTAGGCTGTTTTCCCACCTCTGTAGTCAGGGTTAGATTACATGGGATCAGGGAATAGAGAGGGTTCGAGCTCAGCTGAAACTTGGCACGGGTCAGGATTGCTCTGTGATCAGAGGAGTCCCGCTCAGTCGTCAGAATCGGGGGGACCGGACACAGTGAGGGCTATGAGCAGATGATGTGGACAGATTATTCTTGCAGCAACCCTGGTACCTCCCATCATTGCCTTCTGTTACTGCAAAAAtgacctttttgtgtttttgtttgtttgtttgtttgtttcgcAGGACCACATCTTGAGCACTGGAGAGCAGGGTGGTGTGGTTTTGCAATGAGTATTAGGTAATTTTTtaacagtatgtttttattatgtaagtCGGAGAGCTTTATACCTTATTTTTGGCTTTCCTTGCCCATAAAGGAGGTGGTCAATATGTAAACTTACCACCTTTccaaaaaaacacttcacaaaagGAAGAGCCAACTCTTCACCTATTATCAGTTATCAAAATCCCTCCCCCAGCGTTTGAATTCCTATTGCTTATGTATAGGGATTGTTCCTCATTGTGTGTTGTTAAAAATTGAATGCTACAAGTCTATGGACTCACTCTAAGTAAGGGCTAAGGGGGATTGGTCTCCTTTTGCATCTTTTCCCCAAAGCAATCCTTGTTCCAATAGCCGAGCCCTTTTATTCAAGTCTTTTGCAAATGAATCGACTTATTAATTGGGCCGTACTGGGAGAAATTATTGGATTTCTCACTGCGAAAGTGGATTGGACAACTCTAAATAACCTGGAGCTTTCCAGTAGCTCCTGAACTATTGGGGAGACATCCAGTGAGATATGCAAGCAAATGAGGCTATATGCAAGCTTATATCGAGATTAAAATGCTGCCTTGTTGTCCTGTTAGACAGTGTGGAGACACGACCCCCCTGGGATTAAACTACAGATCATTGGCTGTGTTGACATGCTGGTGAAAACGTCATGACATTCCAACTAGGGTCATGACTTGGGTGGCTGGATTATGATTTTAAACTCATTTggttaatactgtatttatttgacagtCCCCGCTTTGGACCTTTTGTTGTGgccatttttatttcctttgtattCAGACAAAAACCAAAAACCTTACTTCAAACCTTAACCAGCTGTAACTGCCTTGAACAAGTCATGACAGCGCCTCTACTGTGGGGAGTTTTTTTGCCAGTGTGTGCATACAGCCATGGAAAATGGATAAAATGGTTTCAGGAGAGAAGTGTTGCCAAATAAgtcacaaagaaataaacaccCCTCTCCCCTCTGTCGTTGTGATGCGTCTAATGAGCAAAGCAGTCAGTCGTTGGAGTTCTGCAAGTAAGACACAGAAAATATAACTtggaagaaactgaaaatgtaagagAGTGCAGGTAAGAGAGGGTGAAGGGCTTCAGCTATCCACTAACTCAGGTGTTTCCTTATGCCACACCTGCACAACAGGGAAAGAAATAAGTCTGCACAAAATGGTTTGACGTCCTCTGCATTATTCGAGGTTAGCAGAGGGGGTGGGCCCAGACATGCCTGATGACCAACATCTTAAATAGTTGAGATCAGTGTCTTGGGCTCAACCGCTAATAACctctttagttttcattttaattcctttaGTCTTTAAATGGCTCAAGACTGAAAGAAGGTGTTCaatttttaagcatttattttaaggacTAGGCACTAGAGTATTCCACCTGGGTAGTAGAAGTAATCTTTCAGTTTCCCCGGCTGCAGCACTGTCCCCGGTGTAACATAGTTGGCACACAACatcagtcctggggggccacacTCTCAAATTTTTGTATTACTCTCTTTTATAAGTAAACGGCTGCTTAGTTCATCTGATCGTTTATTGTATCTTGTATTCAAATCTAAACCATAACTGTAGTGTATTGTTCACAATGACAATGTAACTTATGACCAAATCTAGGTGGGGACAATAACCTGGACTGTAAgacgggggggcggggggtgaaGGACTTATTTGTGAATTTGCGAACCGTGCTCAGGTGCCataaacactgaacacactaCAGTCCTAATGaagtgaacaaaaacaaaacctgctggatttaATTTTGTACGCCACTGTTTTAACAGCTAATACTTTAAACCCAAATATCTCCCAGAGCAGAATATATGGTACAGGCAACTGTGAATAGTTTGCACTCTTACCATACCTGCTCctgacattttgtttccagACCGACTTCGGTTGCATTGAAACCACACAGGGAGCCGaggatgtaaaataaaaaagtcagtttctcttttgtatgttttgctcCCAATACTGTATTAATACTCTAAAGATGAAGGAAAACTTGACACAGGCCTGTTAGGAagaatatgatgatgatgaa

Function

GO: NA

KEGG:

id description
K10443 KLHL2_3; kelch-like protein 2/3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU134002 lncRNA upstream 25317 26387748 ~ 26387984 (+) True G107126
TU133952 lncRNA upstream 120854 26277374 ~ 26292447 (+) True G107098
TU133936 lncRNA upstream 210682 26199950 ~ 26202619 (+) True G107084
TU133839 lncRNA upstream 524463 25882692 ~ 25888838 (+) True G107004
TU133824 lncRNA upstream 617689 25795413 ~ 25795612 (+) True G106994
TU134004 lncRNA downstream 11744 26447202 ~ 26451575 (+) True G107128
TU134125 lncRNA downstream 403983 26839441 ~ 26842778 (+) False AMCG00011488
TU134230 lncRNA downstream 1031946 27467404 ~ 27468567 (+) True G107321
TU134242 lncRNA downstream 1061869 27497327 ~ 27501442 (+) True G107331
TU134298 lncRNA downstream 1178503 27613961 ~ 27615738 (+) True G107382
AMCG00011478 mRNA upstream 3928 26401965 ~ 26409373 (+) True AMCG00011478
AMCG00011483 mRNA upstream 15319 26388294 ~ 26397982 (+) True AMCG00011483
AMCG00011476 mRNA upstream 52661 26358865 ~ 26360640 (+) False AMCG00011476
AMCG00011472 mRNA upstream 148774 26245927 ~ 26264527 (+) True AMCG00011472
AMCG00011471 mRNA upstream 171274 26240373 ~ 26242027 (+) True AMCG00011471
AMCG00011488 mRNA downstream 391863 26827321 ~ 26842792 (+) True AMCG00011488
AMCG00011491 mRNA downstream 474893 26910351 ~ 26923941 (+) True AMCG00011491
AMCG00011490 mRNA downstream 522684 26958142 ~ 26969283 (+) True AMCG00011490
AMCG00011493 mRNA downstream 623534 27058992 ~ 27067377 (+) True AMCG00011493
AMCG00011494 mRNA downstream 753093 27188551 ~ 27195648 (+) True AMCG00011494
TU133992 other upstream 52526 26356167 ~ 26360775 (+) True AMCG00011476
TU133489 other upstream 2660299 23748674 ~ 23753002 (+) True G106711
TU133383 other upstream 3056742 23356062 ~ 23356559 (+) True G106618
TU133378 other upstream 3071536 23341308 ~ 23341765 (+) True G106613
TU132939 other upstream 6046078 20361208 ~ 20367223 (+) True G106242
TU134100 other downstream 334980 26770438 ~ 26771214 (+) True G107202
TU134126 other downstream 382594 26818052 ~ 26830055 (+) False AMCG00011488
TU134311 other downstream 1276748 27712206 ~ 27727867 (+) True G107394
TU134734 other downstream 3262143 29697601 ~ 29699419 (+) True G107741
TU134787 other downstream 3422512 29857970 ~ 29875476 (+) True G107784

Expression Profile