RNA id: AMCG00011479


Basic Information

Item Value
RNA id AMCG00011479
length 3154
RNA type mRNA
GC content 0.47
exon number 8
gene id AMCG00011479
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 26370173 ~ 26377379 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCAGGCCTTGGAGCAGGAGAAGTATTCCTTGCAGAGGGAGGTGGAGTTGAGAGGCCGCATACTTGACAGTCTGAGGTCTGAGTGTGAAACCATCAAAATGCAGCAGAAGGTTTTGTGGGAACAGCAGGAGGCCCAGCTCGAGAGGAGCCATGCTCTTGAGGTCAATGACTACAAGAACAAGATGGAGAGGATGAAGGCCGAGCTGGACGAGACGCGGCTAAGCGAGAAGCAGCTGAGACACAAGCTGGAGCTGCAGGCCGAGTCTCTGAGCAGCAAGACGGAGGAGCTGCGGGCGCTGACGGAGCGCACACATGAGACCATGTCCTCTGAGATGCTGGAGCTGCAGATGGAGAAGATCGAGCTGGAGACTGCCAAGGCTGACCTGGAGCACGAGCTGAACGAGATGAGGTACCGAGAGCAGCAGCTTCAACTGGCCAACACCAACCTGCAGCGCAAGGTGGAGCGCCTGTCCGATGAAAAGGAAGAGCGGGAGAAAGAGGCCATCTCTTACTTTAATGGCTTGGAGAAAGCCCGGGAAGCCAACCAGGATCTCCAACTGCAGCTGGACCAGCTTCTGCAGCAGTCTCAGGACCCCAACAGCAAAGGCAACTCCCTCTTCTCTGAGGTGGAGGACCGGAGAGCGGAGATGGAGCGCCAGCTGATCAGCATGAAGGTGCAGCACCAGTCGCTCCAGAAGCAGCACGCCTTCTCCAGGCAACAGCTCCACCGGATGAAGATGACTGTAAAGGCCGAGCCGTCCTGCATGCCTTCAGAGCTGACCGAAAGCGGAGATGGGACGTACTACACTGACCTCCTGAAAATGCAGCTTTCAAACTCGATGAAGGAGGTGGAGAGGATAGGAGAGGAGCTTTCCCTGCAGAGGATGAAGGCCCTAGCAGAGAGTCAGAGGGTGCTGGAAGTGGAGAGGAGGCTGTTCAGCAGTGAGAGGACGCTCAAGCTGTGCCAGAGCGACAACATCAAGCTGCAGGTCAAACTGGACGAGATCAGGATGAAATACGAACCCAGTGAGGTGAATAGGAATCGTGTGCAGAAGCGCAGGCGAGAGAAGCTGCCGGTGGACGTGCCATCAcagggctctgagctgaaggaATGGGAGCAAGGCCTGGCAGACAGTGGGCCTGCAGAGACGATCGAGCCCGAGCCCGAGCCCGAGCCCCAGACCTGCACTGTGGAACGGCAGGTCATGACCCCTCTCCAGCAGGTCCAGACCCAGGAGCCCAGCACCCCGCAGCCTCACGATTCCAAGTGTGTCCGCATCTGCGAGGAGCCCCCCTCTGCCCACGTCGCCAGCGAGCCCCCCAGGTCAgtgtcctcctcttcctcctgccaacccctctcccttctcctccGCTGCATGAACATCGCCTTCTGtgtcttcttcctcttcctcgaCTTTGGGCGCACTTTCGTTCCCCGCCTGGCCCTGCCCTCGCTGGCCCTGCCCTCGCTGGCCCTGCCCTCGCTGCCCCTGCTTTTCAGGAAGACCGTGACCAGGAAGAACTCTCAGTGACGCTGGGGAGCGCGCCACAAACCCTGCACAGCTGAAGAGACCTGGAGAAAGAAACTGGATGTCTGATAGATAGGCTTCTTACATTTATGTATCTGCAGCTCTTCAGTGCTCCAGTACGGATTTTGATTCAGTTTTGCAGTAACTTGGCTATGACGGCCTGGTAGTGTAATCATGTCAGGATCCTTCAGCACTACTGCTTTGCCGTTGCTGccttttttatgtgttttaaattttatttatagaagtattgtatattgtttacatttattatattcaaattGTGCTACCTGATTGTTCATAGATATAGAGAGAACTGAAACATCTTccttatgtttgtatgtataaaatgtagttttattttcatgtgcacAGTAATTATCCCTAACCTTATCTCTTGTTGGAACCAGTTAATGAGTTTCACAAACACTAACGTATAGCAGGTTAACTGAATACTATTGTGGCTTTGTTTaatgacaaaatatgaaaaaagcatTAATAGCATATGCATCATATTTATGTAGCATAACTGTTTGACAAGGGGTACAGTGCAGGACTTTACTTCTAGAGTATTCATTATATTTCCTTACTAAGTGTTTTAGGAGTGGAATAATAGTTGCTCACAGTACAAAATGTAAAGAGTCTGCACTGCTTAAATCTGataggattattattttaggaatgtcataattcaaattaaaacaaaggccCGTACCCTATTAACAGGTTGAGAAGTTGTGCGAAGGGTAGAGCCGTGTTGAAGATTGTAAGTGTATGGTGGTGATCCTAGTGGCACAGTGGAGTACAGTGAGACATAGGTCTTTAGGTTGTGGTCGGTGTCAGAGAGTTATATGGATGTTGTATAGAAAGCCTGAGTAATGTGACACACAAAGGAGACAGTGTAGGGAAGACTGGTTAGTTTGAGAAGAGGCACAAGAGTGagaaggaagggagagagagagaactggaaACTAAATCATTGgaagtgaatacatttaattccttATTAATAAAGGCAGACAAATCTGAGGTCTGTAGTATGAAAGTATCTGCTGCTTCAGCCTGGCTTGCTTTAAATGCTGTGGCACAATCTAGTGAACTGCTTCCACCGGCTGCTCTCCAGGGTTAATTCCGGAGCTCTAATAATCCTAACAGCTCAATTCTTTCTCTGGCATTGTGGATAAAATAGTTCAAATTACTAGAaacaattttaactttttttcatCATGATTGTTTTATATGGGGGAGAAATAAAGTTTGGCTACTAATATTCCTTTGAGTTAAGCGTTTGCAAACCtctgaataaaaaatatctttatGGATAGCCATAGGTCTCTTGTGcaaagtattacaataataaaaagaaatgtgtaggggaaaagaaaaaatgcattgcattatAACTGCATTATTATGCTGTAAAAAGGATTTTCTTCAGAGAATGCCTTTTCTACTGCTTTCTCGTGTTTTCTGCATAACTGCTGTGTAACTGGTTTCtccattttttttgtactgtatgttaCTTTGGCATTTAATTCTTATGTAATTAAgtcaaatgcttttctttagTCTTTTTACTTGCATGTGTATGACATTTTTTGATTGCACTTTCCTTGTTCTTTCG

Function

GO:

id name namespace
GO:0034501 protein localization to kinetochore biological_process
GO:0000132 establishment of mitotic spindle orientation biological_process
GO:0007080 mitotic metaphase plate congression biological_process
GO:0000922 spindle pole cellular_component
GO:0000940 condensed chromosome outer kinetochore cellular_component
GO:0005634 nucleus cellular_component
GO:0043515 kinetochore binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU134042 lncRNA downstream 40564 26311843 ~ 26329609 (-) True G107166
TU133934 lncRNA downstream 172340 26196112 ~ 26197833 (-) True G107082
TU133901 lncRNA downstream 242408 26094805 ~ 26127765 (-) True G107057
TU133880 lncRNA downstream 351440 26017239 ~ 26018733 (-) False AMCG00011465
TU133879 lncRNA downstream 353493 26015984 ~ 26016680 (-) True G107038
TU134043 lncRNA upstream 10833 26388212 ~ 26409375 (-) True G107167
TU134045 lncRNA upstream 10833 26388212 ~ 26398851 (-) False G107167
TU134049 lncRNA upstream 10833 26388212 ~ 26409375 (-) False G107167
TU134130 lncRNA upstream 456186 26833565 ~ 26833850 (-) True G107232
TU134131 lncRNA upstream 460788 26838167 ~ 26842786 (-) True G107233
AMCG00011481 mRNA downstream 306 26369321 ~ 26369867 (-) True AMCG00011481
AMCG00011480 mRNA downstream 2057 26362391 ~ 26368116 (-) True AMCG00011480
AMCG00011482 mRNA downstream 8118 26348588 ~ 26362055 (-) True AMCG00011482
AMCG00011475 mRNA downstream 35412 26320021 ~ 26334761 (-) True AMCG00011475
AMCG00011474 mRNA downstream 174323 26191126 ~ 26195850 (-) True AMCG00011474
AMCG00011484 mRNA upstream 69201 26446580 ~ 26490473 (-) True AMCG00011484
AMCG00011485 mRNA upstream 132335 26509714 ~ 26516336 (-) False AMCG00011485
AMCG00011486 mRNA upstream 193793 26571172 ~ 26641966 (-) True AMCG00011486
AMCG00011487 mRNA upstream 311035 26688414 ~ 26731680 (-) True AMCG00011487
AMCG00011489 mRNA upstream 427503 26804882 ~ 26818358 (-) True AMCG00011489
TU133710 other downstream 1351841 25012205 ~ 25018332 (-) True AMCG00011445
TU133362 other downstream 3309207 23053316 ~ 23060966 (-) True AMCG00011409
TU132729 other downstream 6502271 19865614 ~ 19867902 (-) True AMCG00011356
TU132572 other downstream 6957158 19410368 ~ 19413015 (-) False G105970
TU132457 other downstream 7264904 19102293 ~ 19105269 (-) True G105890
TU134083 other upstream 129564 26506943 ~ 26516507 (-) True AMCG00011485
TU134703 other upstream 3247705 29625084 ~ 29625387 (-) True G107713

Expression Profile