RNA id: AMCG00011480


Basic Information

Item Value
RNA id AMCG00011480
length 1628
RNA type mRNA
GC content 0.60
exon number 10
gene id AMCG00011480
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 26362391 ~ 26368116 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTCGAAGACTACAGAGGCGGAGCCAGGAAGTGAGTACTTGTCGTGTGCGAACCTGACTTGCTGTCTGCGTCTATATAAATGCCATGAACCCGGTGGCGGTGGTGTTTGATGATgtcaatatatttacagttttaacacatggacagaaattgaatcgcaattaaaaataaaccgcTACGGTTTCAGTTTACTAGAATAGGCTTTTAAGTTGTAGAAGTCCTGCTTACTATTCTAACTCGGTTGTTGTTTTCAAGAATCGGAATTGGAGTGTCAGAATGGTCCTTAGCGGCGCGATGCGACGGGGAGGCTCCGGTGGGCTGAGGGTGACGGTACTGCTGCTCTCCATGCTCTGTCTTCATCTCCCTCAGGCCGCCGCTGACAAAGGCTGTCTCTGCCcacccccacagacacactctgCACTGTCAGTGGTGGAGACCACTGATCCCAGTGACCGGGATGGGGAAGCCCAGGTAGATGAAGAACTCAACCCAGAAGATCTGGAGGTGTTTCAGCCCACAGACGTGTGGCAGTCCCTCAGGCCAGGCCAGGCCGTCCCCGTCGGCTCTCATGTGCGTCTGAATCTGCAGACGGGCGAGAGAGAGGTCAAGCTGGGGGAGGAGGCGCGGCTGAGATACTGGCACAGCGGCCAGAGGAAGGGCATGTTGAACACAGAGGCCCCACAATTCAGTGCACAGGAGCTGAAGGAGGCCCTGAAGAAGTTCAAGGAGGAGGAACCCACCCACAAGACCAGGGAAAAGgaGGAGGCAGCAGTGCGGGCTCAGTACCGCCccctggaggagctgaagaggGACATGGAGGAGCTCAACATGATGGTGGAGACGGACTTCCAGGTGATGAGTCGCTTGGTGAAGCAGTTCAACCACTCCGAGGCCACGCTGGACGAGAGGGTGGCCGCGCTGCTGGACCTGGAGTACCTGGTGCATCAGGTGGACAATGCGCAGGACCTGGTGGCGATGGGGGGGCTGCGGCTGGTGATTGACAGTCTGAACAGCTCAGAGCCCCTCCTACAGGAGAACTCGGCCTTCGTGTTGGGCTCGGCGTTGTCCAGTAATCCCCGGGTGCAGGTGGAGGCAGTGGAGGGGGGTGCTCTCCAgaagttgctgctgctgctggccaCCGACAGACCATTGCCCCTCAAGAAGAAGGCGCTGTTTGCGGTGGCCTGCCTGTTGCGTCACTTCCCCTTCGCTCAGAGGCACTTCCTGCAGCTGGGGGGGTTGCAGGTGCTGGGGGAGCTGTTCCGCACACCGGGGGGAGGGGCCATGCGCGTGCGGGTCGTCACCCTGCTGTACGACATGATCGTGGAGAAGTACTCCCAGGTGTCCCTGCTGCCCCTGCTGGAGGAGCAGGGCTGGTGCGGCCTGGTCCCCGAGCTGCTGGCTTCCCCCGAGCACGACTGGCGTGAGAAGGCCCTGCGCACCCTGCTGGCCATGATGCCCCACTGCCAGGACCTGTACCGCCAGGACCGCAGCCTGGCACGCTCACTCTCTGCACTGCAGGAGCAGTACCAGGAGCTGGCGGAGGGCGAGCGGGGGCTGGGCGATGAGGATGGCTATTTCGGGGAGATCCTGACCCTGCTGGACACCGTGCTAGGGAGAGTGCGCTGA

Function

GO: NA

KEGG:

id description
K14001 SIL1, SLS1; nucleotide exchange factor SIL1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU134042 lncRNA downstream 32782 26311843 ~ 26329609 (-) True G107166
TU133934 lncRNA downstream 164558 26196112 ~ 26197833 (-) True G107082
TU133901 lncRNA downstream 234626 26094805 ~ 26127765 (-) True G107057
TU133880 lncRNA downstream 343658 26017239 ~ 26018733 (-) False AMCG00011465
TU133879 lncRNA downstream 345711 26015984 ~ 26016680 (-) True G107038
TU134043 lncRNA upstream 20096 26388212 ~ 26409375 (-) True G107167
TU134045 lncRNA upstream 20096 26388212 ~ 26398851 (-) False G107167
TU134049 lncRNA upstream 20096 26388212 ~ 26409375 (-) False G107167
TU134130 lncRNA upstream 465449 26833565 ~ 26833850 (-) True G107232
TU134131 lncRNA upstream 470051 26838167 ~ 26842786 (-) True G107233
AMCG00011482 mRNA downstream 336 26348588 ~ 26362055 (-) True AMCG00011482
AMCG00011475 mRNA downstream 27630 26320021 ~ 26334761 (-) True AMCG00011475
AMCG00011474 mRNA downstream 166541 26191126 ~ 26195850 (-) True AMCG00011474
AMCG00011469 mRNA downstream 199513 26138966 ~ 26162878 (-) True AMCG00011469
AMCG00011470 mRNA downstream 242376 26113869 ~ 26120015 (-) True AMCG00011470
AMCG00011481 mRNA upstream 1205 26369321 ~ 26369867 (-) True AMCG00011481
AMCG00011479 mRNA upstream 2057 26370173 ~ 26377379 (-) True AMCG00011479
AMCG00011484 mRNA upstream 78464 26446580 ~ 26490473 (-) True AMCG00011484
AMCG00011485 mRNA upstream 141598 26509714 ~ 26516336 (-) False AMCG00011485
AMCG00011486 mRNA upstream 203056 26571172 ~ 26641966 (-) True AMCG00011486
TU133710 other downstream 1344059 25012205 ~ 25018332 (-) True AMCG00011445
TU133362 other downstream 3301425 23053316 ~ 23060966 (-) True AMCG00011409
TU132729 other downstream 6494489 19865614 ~ 19867902 (-) True AMCG00011356
TU132572 other downstream 6949376 19410368 ~ 19413015 (-) False G105970
TU132457 other downstream 7257122 19102293 ~ 19105269 (-) True G105890
TU134083 other upstream 138827 26506943 ~ 26516507 (-) True AMCG00011485
TU134703 other upstream 3256968 29625084 ~ 29625387 (-) True G107713

Expression Profile