RNA id: AMCG00011483


Basic Information

Item Value
RNA id AMCG00011483
length 1860
RNA type mRNA
GC content 0.60
exon number 2
gene id AMCG00011483
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 26388294 ~ 26397982 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atggaGAACCAACTTTGCAAGCTCTTTGTCGGTGGCCTAAACGTACAGACCACAGACGATGGTCTCCGCAAACATTTCGAGCAGTATGGCCAGCTGACCGACTGCGTGGTGGTCCAAAACCAGCAGCTCAAACGCTCCCGCTGTTTCGGCTTTGTGACCTACTCGACTCCGGGGGAGGCCGATGCCGCAATGGAAGCAAGGCCGCACGTTGTCGATGGTAACAACGTGGAGCTGAAACGGGCCGTGGCCCGGGAAGACGCCGGCAAACCCGAGGCCCTCGCCAAAGTCAAGAAAATCTTCGTCGGTGGCCTGAAGGAAGATGTGACAGACGAGCACCTCACCGAGTATTTCTCCCAGTACGGCGCCATCGAGAAGGCCGAAGTCATCACCGACAAGCAGACCGGGAAGAAGCGGGGCTTCGGTTTTGTCTACTATGAAGACAACGACTCCGCCGACAAGGCCGTGGTGGTCAAGTATCACTCCATCAACGGGAACAAAGTCGAGGTGAAGAAGGCTCTCTCCAAGCAGGAGATGCAGTCTGCCGGAGGCCGAGGCGGCCGAGGGAGAGGCGGGCGAGGAATGGGAAGGAATCAAAATGGCTACGGCGGCGGGAGAGGAGGTGGAGGCTACAACAGCTATGGTGGTGGCTACGGTGGTGGCTATGGAGGCAATGATGGCGGCTATGGCGGTGGCTACGGGAGCGGTGGGGGCTACGGCGGCGGCTATGGAGGGGGCTATGGTGACCAGATGGGCGGCTACGGCGGCGGGAACGGCTACAATGACTTTGGCAGCGGGTATGGCCAGCAGTCCTCCGGCTACGGCCCAATGAAAGGAGGCAGTAATTACTCCGGCAGGAGTGGCGCTCCTTACTCCCGAGGAGGCGGCGGTGGAGGCTACGGGAGGGGCGGCTATGGGGGCTCACCAGAAACTACAACCATGAAAAGCCAACTTTGCAAGCTTTTTGTCGGCGGACTGAACGTAGAGACCACCGATGAAGGTCTCCGTAGCCATTTCGAGCAGTATGGCCAGCTGACCGACTGCGTGGTGGTCCAAAACCAGCAGCTGCAACGCTCCCGCTGTTTCGGCTTTGTGACCTACTCGACTCCGGAGGAGGCCGATGCCGCAATGGAAGCCCGGCCACATGTCTTAGACGGCAACAACGTGGAGCTGAAACGGGCCGTGGCCCGGGAAGACGCCGGCAAACCCGAGGCCCTCGCCAAAGTCAAGAAAATCTTTATCGGTGGCCTGAAGGAAGACATGGAGAGCGAGCACCTCACCGAGTATTTCTCCCAGTACGGCGCCATCGAGAAGGCCGAAGTCATCACCGACAAGCAGACCGGGAAGAAGCGGGGCTTCGGCTTTGTCTACTATGAAGACAACGACTCCGCCGACAAGGCCGTGGTGGTCAAATACCACACTATCAACGGGAACAAAGTCGAGGTGAAGAAGGCTCTCTCCAAGCAGGAGATGCAGTCTGCCGGAGGCCGAGGCGGCCGAGGGAGAGGCGGGCGAGGAATGGGAAGGAATCAAAATGGCTACGGCGGGGGGAGAGGTGGGGGTTACAATTATGGTGGCGGATATGGGGGCAATGATGGAGGATACGGCGGCGGCTACGGCAGCGGCGGTGGTTACGGCAACCAGGGCGGCTACGGCGGGGGTTACGGAGACCAAATGGGAGACGGCTATGGCAATGGGAATTGCTACAACGACTTTGGCAGCAGCTACGGCCAGCAGTCCTCCGGCTACGGGGCCATGAAGAGCGGAAACTATTCTGGGAGGAATAGTGCACCTTACACCCGCGGAGGCAacggcggcggcggcggtggCGGCTACGGCAGAGGAGGCTACGGGGGCTATTAA

Function

GO:

id name namespace
GO:0019013 viral nucleocapsid cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K12894 HNRNPA0; heterogeneous nuclear ribonucleoprotein A0

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU134002 lncRNA upstream 310 26387748 ~ 26387984 (+) True G107126
TU133952 lncRNA upstream 95847 26277374 ~ 26292447 (+) True G107098
TU133936 lncRNA upstream 185675 26199950 ~ 26202619 (+) True G107084
TU133839 lncRNA upstream 499456 25882692 ~ 25888838 (+) True G107004
TU133824 lncRNA upstream 592682 25795413 ~ 25795612 (+) True G106994
TU134004 lncRNA downstream 49220 26447202 ~ 26451575 (+) True G107128
TU134125 lncRNA downstream 441459 26839441 ~ 26842778 (+) False AMCG00011488
TU134230 lncRNA downstream 1069422 27467404 ~ 27468567 (+) True G107321
TU134242 lncRNA downstream 1099345 27497327 ~ 27501442 (+) True G107331
TU134298 lncRNA downstream 1215979 27613961 ~ 27615738 (+) True G107382
AMCG00011476 mRNA upstream 27654 26358865 ~ 26360640 (+) False AMCG00011476
AMCG00011472 mRNA upstream 123767 26245927 ~ 26264527 (+) True AMCG00011472
AMCG00011471 mRNA upstream 146267 26240373 ~ 26242027 (+) True AMCG00011471
AMCG00011473 mRNA upstream 188945 26189132 ~ 26199349 (+) True AMCG00011473
AMCG00011467 mRNA upstream 252516 26127315 ~ 26135778 (+) True AMCG00011467
AMCG00011478 mRNA downstream 3983 26401965 ~ 26409373 (+) True AMCG00011478
AMCG00011477 mRNA downstream 15319 26413301 ~ 26435458 (+) True AMCG00011477
AMCG00011488 mRNA downstream 429339 26827321 ~ 26842792 (+) True AMCG00011488
AMCG00011491 mRNA downstream 512369 26910351 ~ 26923941 (+) True AMCG00011491
AMCG00011490 mRNA downstream 560160 26958142 ~ 26969283 (+) True AMCG00011490
TU133992 other upstream 27519 26356167 ~ 26360775 (+) True AMCG00011476
TU133489 other upstream 2635292 23748674 ~ 23753002 (+) True G106711
TU133383 other upstream 3031735 23356062 ~ 23356559 (+) True G106618
TU133378 other upstream 3046529 23341308 ~ 23341765 (+) True G106613
TU132939 other upstream 6021071 20361208 ~ 20367223 (+) True G106242
TU134100 other downstream 372456 26770438 ~ 26771214 (+) True G107202
TU134126 other downstream 420070 26818052 ~ 26830055 (+) False AMCG00011488
TU134311 other downstream 1314224 27712206 ~ 27727867 (+) True G107394
TU134734 other downstream 3299619 29697601 ~ 29699419 (+) True G107741
TU134787 other downstream 3459988 29857970 ~ 29875476 (+) True G107784

Expression Profile