RNA id: AMCG00011488


Basic Information

Item Value
RNA id AMCG00011488
length 6413
RNA type mRNA
GC content 0.46
exon number 11
gene id AMCG00011488
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 26818052 ~ 26842792 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCTGGTGCCCCGGGGACTCGCATGTCTATCGCGGAGGAACCCGAAGGCAGCGAGATGCCTGTAGAGCCAGATTACCACAGTGACAAGATGAAGCAGAAGCAGCACCTAGCTACAGAAGAGCTTATAACCAGTGAAAGGAGCTACCTGAGACTGCTACAGCTGTGCTGTGTAGACATCAGAGGGAACCTGCAGCGCCTTCAGGTAGGGTATTCAGGCGATGCCTTCTTCACTGTGAAAGGTGATATGGAGATGGTTTACAGGGAATACTGTGCCAACTACAACAACATTGCCGCAATGGAAAACCGCTGCAAACAGAATGAAGCCGTCTGGGAGAAGATGCTGCTGATAATAAAATCCTCAGCTCCGGACATCAATGCCACCTCCCTGACATTTTTCCTGGTGATGCCCATTCAGAGGATAGCTCGCTACCCCCTTCATCTGCAGACCATCTTGAAGCACACGGACCCCCAACATCCGGCCTACTCCACCCTGGAGGAGACAGCCCAGGCCACCGTGGAGATCAACTGCAGGATCAACGAGTATAAGCGCTTCAGAGAAGTAGctGACAAATATAGAAAAACTGAGAGCCTGACGATGAAGGACAGGATGAGCAGGCTCAACGGCCACAGCATTGCCAAAAAGACTTTACGACTGCAGCAGCTGCTCAAACACGAAACGGGCATCAAAGTGAAAGTCAAGGATGAGGAGTTTGATGCCTTGGAggaacatttcaatttaatggAAAAAGGGATTGTAGACCTACATGACAACATGAAAACATACCTCATACACCTGCAGGATTACCTGATGTCTCGCCCAGATGAAAGCGATCTGGACCTGGACAGTGAGCAGTCTGCCCACTGTTACAAGGAGATAAGGGGTCTGCTGCATCAGATGATATACCCAACCTTTGAGTACAGGCTGCAGTCACTAGTGTTCAAGCCACTGTGTTCGCTCAGGGAGCTGCTAGACGGCCCCCGCAACCTCATCCGCAAGCACCTGGACAAACTCCTGGACTTCGAGCTGCTGGAAGAGAAGCAGAGCCTCACCTATGAAGAGGAGGAAGTCGTCAACACTTATAAGACAATCAATTCTCTGCTGGTGGCCGAGCTGCCCCAGTTCAACGGCACAGCGCTCCAGCTGCTGAGGAACATCCAGAGGGCCTACATCCGTGTGCACAAAGACCTGGCGGCAGAGATTAAGCAGCTGGTTGGAGGCTATCAACCTCACAGCCATCTGGACCCCAGTGCGTTCTGGCAGTGGGCAGGGGATGCTGTGCAAGAGGAGGCAAAGAAGCTCAAGAGTCTGTGCCAGAATGTGGAGAAGCAATTGAATGACCCCATTGTGCAGCCCCTGAACCCCTCACTTCAAAAAAGACTCGAGTTCCTTAGCAAGAGGCATGCCATTGACCGTATCTACCAGCTGACCGGCAATGTGGGGGGCAGCCGTGACCTGGACCTGACCCTGCAGAGGGGGGAGCTGGTTGGGGTCCTGCAGGAGATGGACACCAGTGGCGACCGGCGCCGGTGGCTCGTGGATGCTGGAGGTCCCAGAGGATACGTCCCCTCCGCCAAGCTGAAGCCCTACCACCAGGTGACGCAGGCCCCACCCTCTTTCCCGCGATTGCTATCTCACAAAGTGGGAGGGGCAGATACAAGGAGGCACTCCTATTCGGTGTTGGCTCCGCCACTCACCCTCTCATCCACGCCTTGCTTCCAGGTGTTTGCTGCCTATGACTTCTCAGCACGTGGTCACCACGAGGTGACGCTAAGGGCGGGGGAGCCTGTGAACGTCCTCGAGCCCTGTGACAAACAAGGGAACCCCGAATGGAGCCTGGTCAAGGTCCGGGGGCAGCAGGGCTACGTGCCCTCCAACTACCTGACCATGCTGCCCACTCCTGTGGCCAGGTCAAACACACCCGCCACTTGACAGCTACCAGCCCCCCAAGGCTTCCGAAATCATGGATTGTTGCATCACGGGATGTGGAGTGGGTGACTGTTTGCATTGCGTCTCCAGGTAGCAGCGCTGCAGAGCACAAACCTCCCAATGGAAAATTGATTCATCTGTTTCTTTAATATTGATGGACTTCCATGGATACCCATTTATTCAGTTGGACAATTACTGGAGCTACCTATCATTCCCTGGATAAATCTGGGGATGGAATTCTGTTGGAAACCCTACATGTCTACCTCCAGAGAGGATATTCGAATTTCTGCTCCGTGTCCTCTGTGGAAGACCTCTGTGGGACTCCAAAATGGACAGAGCAGAGGAATATTAATGATTGGtgtaaatatgattttcttATTACTACAAATTACTCCCTCCTTTTTGAGCCAGAGAAACAAATAAGACCTGGAAAACATGACTCAGTTTTTACCCCAGACGTTTTTTCTGCGAGTTACAGAAGCCCCAAAAGGGGCTGAAATTGCAAATCCGAACAGCTGTTTCTCCGTTTGAATGTCTTAATTAGTCCCAGGTAACTTAGTGCACACAGtgaatgtacagtactgtgtgaATTCCATAGAACACCTTAAGACAGGGAAACTATTTTGCTTTGCATGGAAAAAGTTCCTTAATTACAGCAATTAATAATGTCTGCAGACTCATCGTGCATGGAGCTAATACACAACAGAGAATGTTAGGGGTCATTGTCCTCCTGGAGTATGAAAATCTCTCCAATCAGCTTATCCCCAGATGGCAAAGCGTGATGGACTAAAATACTGCAGTGCTAATGCTGATCCATCATTCTGTGTGTTGCGTAAATAATGATGAAAACTTAACAAATATAGTCCCCGTGCATTTTACAGTTTGCAGCTCTGTGCTCCTTTTGTCTTACTATTGGAAGTGAACTGCAAGCACAGCATATTACAGTTAGACAATCGTTAATGAGCCTGTTTGGGCCAATTTCTAGGTTTCACATAGGGGTGTTTGTATTCTTGAGGAAAATGACTTTTCAAATACGTTGATTATAACCCCCCCCCATATATCTGGGGCATTTTCAATACAAAGGTTGTCAAGTAATTCGCTGATATGGTAATCCAGGCTCCTGGTAGTCCTCAGTCATTTTGAAGATGTAGGTATTTCACATTTACTACCAGAGCCGCTGGGTTGGGAAATTAAGTCTTGCTTGTTTGTGGGTTTGGTTTCCGTGGCCCAGCACATCAGAAACACAAGCACTCAGCCACTGAATctgtcacattttatttgacGGCGCGCCATTTCACAAGGTGCCACATCTCCCAGTGTGAAATTAAAGGAGAACAGATGAGTTATGTTTCTGTCACTGTGAGAAAAatggaataacaagaaataTGACCATCAGTGGAAATGGGCAGCCATGCTGATGGTTTTGTGCATCATCCACAAATCTTTAACCATACCGGTGTTGATGCACCTTAAGTGATGACCTTaaactgaagtgtgtgtgtgtgtgtgaggtatCAGTCCTAGCCTCATTTGAAGACTTGAAATGAAGGttgcacaaaaaaaagtgtttgcacgggaatttatttatatatagattgatTTAACAACCTTGTACTCTTCGCTCTTCTACAGTGATATACTCGGTTGGTAGGTGTTGTATATTTATAGCACAATAAGCTGCCTATGGATTGGCACTAGGGAGCTGATGCGTTGACTCACTGCAGTTCACTCTGTGTAGGATGTAGGAACTCCACGCTCTAAAAATAGATTTCCTCTTTTCAATGACACAAAAATAGCTCTCCTTGACAGGTTCTCAGCAGGGTTCTCAGTCTGACTCATGACTCCCCCCCGCTGGCTATGCTGGAAATGGCAGCATTTTCACAGGGCATCAGTAAACGCTTGTTTTGCCTTCTGGATTTTTTGCTAACGCCAGTGGGTTGTACAGCTGCAGAAGCAACAACAGGCAGTGTAAAATACTACATCCTAGTGCTCACAGGGATTAGACCCACTAAGGAGAATCCACTGCTGTTTTGCCTATGGAATGGATCTCATTGCTGTTTAAATTTGCTCCACAGTCTGAAAAACTAGAGTTGCAGCATCACAGCATGAATGAAAACCGAGCCCTACGGCATGCAGCCTCTTTGAGAGACCTCGTGCTGAAAGATTAGGAGTAGTATTCTATTTTGAttcctttttccccccagttttTCCACTCCTGTAGTATAAAATATCAGTTTCAGACCCGGCATGCCCCATGAGTTCCTTGAAGCCACCACGTTTGTGCCAGCTGTGACGCGTAGACCTGTCAGCCACTTTCAATATGGCAATGCCGCGCAGATCCGCGGAGAGAGAGCTCCTCGCAGGACTTCCATTCATGCCCTGGAAAAACTCATGCTCACCACTGAAGGAAGTTATTCCTAGCTTTGTGTCCTAGGTTTCTCTAAACATAGCTGTAGAGCGCTACGAGCGGGAGTCTGTGGAGCGCCACGATGATGTATTAAATTCTGCATTATATAAATAGCTCATGTCGGCATCGGACACAGCAGCTGCCAAGCCTCGAGCTGGTGACATTTCTGAACCCCTGTTTATTCAGGCTGGGTCAGCTGATCTCTTACACAACCCCATTTGGGTTAAACAATGCTTATCCACTGTGAGACTGGGAAGATCTCCAGTTACTAATTACTGGTGCTTAATATAGTAGAGTCCCCCATGCTGGAGCTTTCACACCAGGCCCTGCCATTCACTCGGCTGTCTGTATTCTTCTGCAGTCTGCGGGGACTCGGAGTGGTTTTAATGAGGGGGAATTATTTTAATAGCTTGTGAATGATGGCAATAGAAATGCCAGTCTTTTCCTTTCACCGtcgtgtgagtgagtgagtgcgaGTTTGtgcatgggtgtgtgtgtgtgtggttgctGTGCCTTTCCAAACCCCTTTCTGGTTAGAAAACTTTTACTATTTTCCCAAATCAGTAGTCCCCTCAAGAAAAGGAGGTGGAGTTATTAGAACTTGAGAAAAGGCTTTTCTTTTACTTGCAACCTACAAGGTTGTGGCCGTGTTTTTCAGTGAGCTTGgctttttgtcatgttttatttgtttgttatttacattgATGTTAACAATTCCCTTCCAACTCAAAGTCAGGACTGTTACAAGATTGTGTCCAAATACCTGACAGACTTTGGAAGGTCATTGACAGTTTGGGGAGGGGGCTTTGTCTGAAATTCCAGTGGGAATTAGTATACACTTTTCGACATCGGCCTCCAGTCTGCCATTAAAACCTGTATCTGTCTGAATCCTGCATCGGATTGCACTTGGCAGATCCGTGACTCTGCTCACTAAGTGTGAATGGCCTTAATTTCCTGCTAGTGAGCCCCATCTGCTGTGTAAGGCCAACTTAGCAAGCAGATGGATAAATCTGGTCGCCATGACAATTTTTTACTACAGGAAGACAGTGTCCCCAGTCCACACAGGAATTGGCCCCTCTCACCTGCGATTTAGACTCCTGGCAGGTCTCTACGAAGATCTTCGGAATTGTTTGTTTCCCCACCTTTATCGCGTTCTGATCTTTCTGAGGTCTTGTGTTGCTTGAGCATATAGGTTTTCATCGTTTTTCTCTATCTGATTCGGAGCTCTCGTGTATCGGCTTGCAGGGCCAGCACTGCTCTGCAATCTATTCTGTTCCTGCCGACAGTGTGCAGTGGTGGGAAAAGAGCAATTATTGTGATGAAGCCTGACTCCGAACAAGCTATTTGGATCCTGCGACTTTTTAAACGCATTGCTCCATACATTCTTTGCTGTAAAGTgtcaaaatgaatgtattggAACAGGAGAATGTAAATGCTGCAGGGGATTGATGTTGTTTTCAGGGGGGATGCATTACTGAGAGCTTTACAGAATGTTCTTAACGTCGAAAATGTGAAGTAAACCTCCAGAATGATAAAGGCACCTTATGAGTTACGCACTGTATTTTTATGCTTCTAACCAACACTTGGAATTTGTAGTGCATTGCTGCTAAACCGTCATAATGAGCATCTTGTAATGAAGACCGTGTTCAATATTGATTGAggtgaaattatttttgtactgaAGTATTTATCGTAATGTGTGCCTGTTCAATAATGTCCTTCAAGCTGTTTTAGGAGCCCAGGCTTTCTCTTTAATgcattgtgtaattgtattaatgAAGACGTTACTGTAGCCAAAACACTGAGTGTGTCCGTAGCAAATGTGCCAATGCATTGTCCAAAAGATACTTGGGCTCCCTTTGTTGGGTCTCAATGCTTATTGATCTTAatggttttattgtatttattgtgttgatAATATATTCTCTACTGTTGCATCATGAAATATAGTGTATGCTTAAGACAAGATTGTTTGCATTCTGCTTTCCTGTGTAGCTCATAGAAcatgaaagtatttttataaCAATGTGCTgtatacaggaaaataaaataaagacgaGCAAAAAATAGATCAAAA

Function

GO: NA

KEGG:

id description
K20710 ARHGEF37; Rho guanine nucleotide exchange factor 37

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU134004 lncRNA upstream 375746 26447202 ~ 26451575 (+) True G107128
TU134002 lncRNA upstream 439337 26387748 ~ 26387984 (+) True G107126
TU133952 lncRNA upstream 534874 26277374 ~ 26292447 (+) True G107098
TU133936 lncRNA upstream 624702 26199950 ~ 26202619 (+) True G107084
TU133839 lncRNA upstream 938483 25882692 ~ 25888838 (+) True G107004
TU134230 lncRNA downstream 624612 27467404 ~ 27468567 (+) True G107321
TU134242 lncRNA downstream 654535 27497327 ~ 27501442 (+) True G107331
TU134298 lncRNA downstream 771169 27613961 ~ 27615738 (+) True G107382
TU134320 lncRNA downstream 948074 27790866 ~ 27830847 (+) False G107402
TU134321 lncRNA downstream 948074 27790866 ~ 27874138 (+) True G107402
AMCG00011477 mRNA upstream 391863 26413301 ~ 26435458 (+) True AMCG00011477
AMCG00011478 mRNA upstream 417948 26401965 ~ 26409373 (+) True AMCG00011478
AMCG00011483 mRNA upstream 429339 26388294 ~ 26397982 (+) True AMCG00011483
AMCG00011476 mRNA upstream 466681 26358865 ~ 26360640 (+) False AMCG00011476
AMCG00011472 mRNA upstream 562794 26245927 ~ 26264527 (+) True AMCG00011472
AMCG00011491 mRNA downstream 67559 26910351 ~ 26923941 (+) True AMCG00011491
AMCG00011490 mRNA downstream 115350 26958142 ~ 26969283 (+) True AMCG00011490
AMCG00011493 mRNA downstream 216200 27058992 ~ 27067377 (+) True AMCG00011493
AMCG00011494 mRNA downstream 345759 27188551 ~ 27195648 (+) True AMCG00011494
AMCG00011495 mRNA downstream 428806 27271598 ~ 27279308 (+) True AMCG00011495
TU134100 other upstream 56107 26770438 ~ 26771214 (+) True G107202
TU133992 other upstream 466546 26356167 ~ 26360775 (+) True AMCG00011476
TU133489 other upstream 3074319 23748674 ~ 23753002 (+) True G106711
TU133383 other upstream 3470762 23356062 ~ 23356559 (+) True G106618
TU133378 other upstream 3485556 23341308 ~ 23341765 (+) True G106613
TU134311 other downstream 869414 27712206 ~ 27727867 (+) True G107394
TU134734 other downstream 2854809 29697601 ~ 29699419 (+) True G107741
TU134787 other downstream 3015178 29857970 ~ 29875476 (+) True G107784
TU134867 other downstream 3328996 30171788 ~ 30212090 (+) True G107858
TU135008 other downstream 4141187 30983979 ~ 31173789 (+) True AMCG00011551

Expression Profile