RNA id: AMCG00011490


Basic Information

Item Value
RNA id AMCG00011490
length 4751
RNA type mRNA
GC content 0.44
exon number 4
gene id AMCG00011490
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 26958142 ~ 26969283 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCTCATGTCACATGACAGGGGTTATATGGCTGCCTTCAGCTGTCCCATCCGTGTTCCCGTTTGCTGAAGTTGAAAATGCAAAGTTACCTCCGCGGTGATCCTAGGTAATGAGCAATGAACCACCCTGCACCCAGATCCCCTACTCGCCAATAAACGGACACGGTGGCACTTCAGGAGAGATGGGAGCCGAGATGAACCCAGATGAAGAGCAGGAGGCCCTGACGGgagacgagatggaggagaaaCGGTACCGCCCATTGGTTTTGGAGGAGTGGGAGAAGGAGACTGCGAACTGGAATGCCATCTTGACCCAGAAGCTTAAGAAACAATGTGCTTGTGGACCAGCTCGGCTCAAACGGCAGATTTTGGGGTTCTTCCCCATTTTGAGCTGGCTTCCTAATTACCAGTTCAAGGAGTGGATCATAGGGGATGTCATGTCTGGCTTGATCGTGGGCATCCTGTTAGTGCCTCAGTCCATTGCCTACTCCCTTCTGGCTGGTCAGGACCCCATCTACGGTCTCTatacctccttcttctcctgcaTTATCTACACATTGCTGGGCTCCTCACACCACATCTCTGTAGGCATCTTTGGGGTGCTGTGCCTGCTGGTGGGGCAGGTGGTGGATAAAGAACTCATGGCTGCAGGCTACCTTACTGTGAGCAACCGGACGGCCATGGTGGGAGAGGGCAACTTCACCGTGCCAATAGACTGCGACCGGAGCTGCTATGCCATCATGGTGGGCACCACCGTGACATTCATGGCAGGAGTGTATCAGGTGCTCATGGGTGTGTTCCAGGTTGGCTTTGTCTCGGTGTACCTTTCAGACGCTCTCTTGAGTGGTTTTGCCACTGGGGCCTCCATTACTATCCTCACCTCCCAAGTCAAGTACCTGCTGGGAATAACACTGCCAAGGACTCGCGGTCTGGGCTCTCTGGTCAAGACCTGGTTCTACCTCTTCCAGAACATTAAGCAGACCAATGTGTGCGACCTCATCACCAGTCTCCTGTGCCTGCTGGTTCTGGTGCCCACCAAGGAGCTGAATGACCGCTTCAAGTCCAAGCTCAAGGCACCCATCCCCATGGAGCTGATTGTGGTTATCGTGGCCACTCTGGCATCCCATTTTGGCCGCTTCCAGGAACTCTATGGTTCTGACATAGCCGGGGCCATCCCCACCGGCTTCCAGGCCCCCATGCTCCCTGCCTGGTCACTGATCCCCAACGTGGCTGTGGATGCCCTCTCCATCGCCATCATTGGCTTTGCCATCACCGTCTCTCTGTCAGAGATGTTCGCCAAGAAGCACGGCTACGAGGTGGATGCCAACCAGGAGATGTACGCCATTGGTTTTTGCAACATCTTGCCGGCCTTCTTCCGCTGCTTCACCACCAGCGCTGCCCTCACCAAAACCCTGGTGAAAGAGTCTACTGGCTGCCATACACAGCTGTGTGTGCTGGCCGTCATTATCGTAGTCAACCTCAAAGGGGCGCTGCGCAAGTTTGCCGACGTGCCCCGCATGTGGCGCGTCAACCACGTGGACGCCAGCATCTGGCTGGTCACCATGGCCACCTCGGCCCTTCTCAACAccgagctggggctgctggtgGGTGTGCTGTTCTCGGCGCTGTGCGTCCTGGCGCGCACCCAGAGGGCGACGGCTACAGAGCTAGGCCGGGCGGGAAAGGAGGAGCTGTACGAGGACCTGGGCACCTACAAAGGGCTGAAGACGCAGGCCGGGGTCACAGTCTTCCGTTTTGAGGCGCCCATCTACTACGCCAACCAAGCGCTCTTCAAGAAGGCTCTGTACCAGCGCTTGGGCCTGGACCCTGTCAAGGAGAAGTCTCTGCAccagaagctggagaagaagaagaggaagcagCAGCGAGAGGCCAAACTGGAAGCCGGGGAAGAGGATGGGCAGAGCAGGGCCAAAGATGGGGCGATCGCTGTTTCTCGCCCCAGCTTCCACACCCTGGTTATAGACTGCGGCCCGGTGCTATTTCTGGACACACCTGGAGTGAACGCTTTAAAGGAGGTGCGCAAGGACTACGCAGAGCTGGGCGTGCGGGTCCTCCTGGCCCGGTGCAACCCGACCGTGCTGGACTCACTGCGCAGAGCCAGCTACCTGGAGGAGGACAGCGCTGTGGAGAGCGTGTTCCTCACCATCAGCGACGCAGTCAACTACTCCTGCAGCCTCTGCTCTCAGAATGGGGGGTGCGAGACTTTGTGCTGATAGACATTTCTTCATTGTTATGGTGCCTTAATGAGCAGATCTATGCATATTTTGGAGCTGCTCTGTTTCTTAAGTCATACTTAATTTTTAGAGAAATTGAAATTCTTTagggctgtttttttgtttgtttgtttcttaaacaagttgttcttttttttattggcgTTTTATAAAGAGCATCCCTGAGAAAACTAATGGCTTTgggaagttttgatttaaagtcACCCTAAATCTAGGGTTTCAAACTAGACCTTTCAAGCACGTAAGTTTGGAGCTGGGATATCTGCAGcacaaatgcaaatatgaataacaacaTTAGTAATATATTCAAGTTCAGTAAgttgaattatttttacatatatttattttacatataagtATGTACACCATTTTACCCCAATGTCATCagaatttattaattaatataaaggtgtattttattgttattacatcagttttattactttaaaacactgttaaatcTATCCCATGACAAGCCACGGTATTGCTTGACTGCACATCGTGTTTCTCAACATACaacaatttttaattattggaaGGAAACAGggaaacatacatttctttattttagtatttgtttctctctctgcctgttttGGCAACCTAATGTAGTCTGGATTTGATTGTTATCACATGTGAActatattttttacatgtaattGACAGGAGGCTCAGTTAATTTTAAAGCcttaaatgaatgtattcacactttgtatatatattttgtttctgagatAATCAAACTGTGAGGTTTGTCTTGAAGCTGGAACTGTCAAATAACCTCCCTGCCTTAAATGTGGCTTTCTTTCGCATTGTCCAAAGAAGGTCATGTGTATATGCACTAGTTACATAAAGTAGTTAGATGATCACTCCATATCTTTTTGTGGTGATCtgacattatattattatattatattatattcaaacCCCTCAGGCAAGTTACCTTGATAAACTGAAGCCAATGTCTTCACATCCCAAAACCATGCCATAGTTGTGCCAGTTGGATAAATCATTTTTTGGAGCAGGGGTGTGTATACCTAATTTTATTGTTCCAAAGAGGATCTATGAAGGAGAATCACAATTGTAACAAAGTTacaaaaaaccaaaaaaaggttGTGAAGCCCCCGTTTCACAGGGTGCCAGTGTGCATATTTGTACAATGTTTCAAAATCAGATTGAATTGGTTCTGATGGGTGATGTCAGAAGTCCTGCATTTTAGTGCTAGGGCTCACCCAGAGGTTTTGAGAGCCACAAGCTTGTGCTGCTTTTTTTGGAAATTGTGAAattcaaatacagaaatgaaatgTTGGAAAAAGGGGAATAGGTTTTTCTAAAGCAAATGAAACCTTTGCCATAGAAGGCATAACACAGAATTATGGACTGGATTGCTAATCcaggtgtattttatattggAACTTCAGCCTGTAAAAAAAAGGTGTGCCTAATGACAATGTTTACTAAAGCAAACACAATTGCACAATTTTGTTCCCCCTGGCTGGTTTTCATTACTGTTATGGGgcaaatttaaatataacttCCTCAACCAGCCAACCGCACAAACCAAATCGAGCTTTAAGAATTGTCCATATCAGGCAtgataaacatttcaaatgtttatgcTGCTCTTAAagatataatgtattgtttatattgatcATATGtctataatgtatgtatgtacttatgTATGTATAAGTATATGTGGCAACGCTGCCCTCTTTCTGATCTTTGAGgaactgtttttgaaagctaTCATGATGCATTAAATGTGTACattgaatgtaaatgtagtAATGACTTAAATGACTGTATTCAAATAATCTATTCATTCTTCTATCCATTTAATCTTCTATCTGTAATATTGGGTTTTAACTAGGATATTATTTATGACCAGTTGGAAACTTTATGAACATGGCAAAGCATTAGCAAGCCTTTCTGAGCCTTTATACATTgcttttgatacaaaataagtatcattattatcatgtatttcttaattttttcagattttcagaatgttttttttagaacTCTTGCTTTCATAGctctaatgtttttaattttatttaagttaaattcATATCAGCCTCTTCACTGAAGTACACCCTTCATTAAGCTAAACACTGTAATAGTCATGTTCtccaatattaaaaacaaactaaatcaaCCAGACTGGGAATactgtagtatagtataatagtctctaaaactaaaattatgTCACAATCCCATCATTTACCATACACAGCCAGGATGGGAAAatgtgcaatgttttgttttttgaattatgttgtgttttaatctgtttgacaacatttttttgttttaccgtGCTCTTACGCATTGTATTATGCTTTGCTTATATACTTTTATTCCCATTTTGCTGTTAACATTCGAAAATGGAGAACTGGATTCTTCCATTGTATCGTTTGTCTTGATTACAGTACAACAGTGAGAACCCTGCtatcttaaaaaaagaataaaaatattttacaaag

Function

GO: NA

KEGG:

id description
K14701 SLC26A2, DTD; solute carrier family 26 (sulfate anion transporter), member 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU134125 lncRNA upstream 115364 26839441 ~ 26842778 (+) False AMCG00011488
TU134004 lncRNA upstream 506567 26447202 ~ 26451575 (+) True G107128
TU134002 lncRNA upstream 570158 26387748 ~ 26387984 (+) True G107126
TU133952 lncRNA upstream 665695 26277374 ~ 26292447 (+) True G107098
TU133936 lncRNA upstream 755523 26199950 ~ 26202619 (+) True G107084
TU134230 lncRNA downstream 498121 27467404 ~ 27468567 (+) True G107321
TU134242 lncRNA downstream 528044 27497327 ~ 27501442 (+) True G107331
TU134298 lncRNA downstream 644678 27613961 ~ 27615738 (+) True G107382
TU134320 lncRNA downstream 821583 27790866 ~ 27830847 (+) False G107402
TU134321 lncRNA downstream 821583 27790866 ~ 27874138 (+) True G107402
AMCG00011491 mRNA upstream 34201 26910351 ~ 26923941 (+) True AMCG00011491
AMCG00011488 mRNA upstream 115350 26827321 ~ 26842792 (+) True AMCG00011488
AMCG00011477 mRNA upstream 522684 26413301 ~ 26435458 (+) True AMCG00011477
AMCG00011478 mRNA upstream 548769 26401965 ~ 26409373 (+) True AMCG00011478
AMCG00011483 mRNA upstream 560160 26388294 ~ 26397982 (+) True AMCG00011483
AMCG00011493 mRNA downstream 89709 27058992 ~ 27067377 (+) True AMCG00011493
AMCG00011494 mRNA downstream 219268 27188551 ~ 27195648 (+) True AMCG00011494
AMCG00011495 mRNA downstream 302315 27271598 ~ 27279308 (+) True AMCG00011495
AMCG00011496 mRNA downstream 310887 27280170 ~ 27283428 (+) True AMCG00011496
AMCG00011498 mRNA downstream 319160 27288443 ~ 27295823 (+) True AMCG00011498
TU134126 other upstream 128087 26818052 ~ 26830055 (+) False AMCG00011488
TU134100 other upstream 186928 26770438 ~ 26771214 (+) True G107202
TU133992 other upstream 597367 26356167 ~ 26360775 (+) True AMCG00011476
TU133489 other upstream 3205140 23748674 ~ 23753002 (+) True G106711
TU133383 other upstream 3601583 23356062 ~ 23356559 (+) True G106618
TU134311 other downstream 742923 27712206 ~ 27727867 (+) True G107394
TU134734 other downstream 2728318 29697601 ~ 29699419 (+) True G107741
TU134787 other downstream 2888687 29857970 ~ 29875476 (+) True G107784
TU134867 other downstream 3202505 30171788 ~ 30212090 (+) True G107858
TU135008 other downstream 4014696 30983979 ~ 31173789 (+) True AMCG00011551

Expression Profile