RNA id: AMCG00011493


Basic Information

Item Value
RNA id AMCG00011493
length 3608
RNA type mRNA
GC content 0.50
exon number 15
gene id AMCG00011493
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 27058992 ~ 27067377 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gaaaacaggagacaattaTTCAGACAGAGAGTTaatacaatctggaacaaactccccgatgtggttgaagccacaatttgggaacattcaaaaatagactgggtaggatctttggatcacttagttattaatggacaccaaacgagctgATGGGTCCAGtggcctctcgtttgtaaactgttttatgtttttctgataTGTGTTCGGTATGACGTCAGTTGTTGTCATTTGCATACGTAACAGTCGCTGGAATTCGATTGTTTGCTCTGTGGATTTTGCCTAATTAGAGCTGATAGTGTGTTTGGAGACGGAGCCGTACAGTCGATTGATTTTACCTAAgtgtaatttcagttttaacgAGAGACTTTTGGttgtattgaattcaaaatatggCTGCGATTGCAGACTTCAAGTTTTGTCTTGAATACTCTGCAACTTTCAAGTAGGCCGTTTCATTAatctatatttttgttttcattgcagcAGGGTATGTATagactatttgtttttaaatgacagtacAGTTAAAGTCGGGACacaatgtgaataataatgtatttttcaccaGTACAAGATCGTGTGAATTGCTCCTAAGTGTGGGTGTGTAGCTACACATTGAACCATTATTCTCGTTTATTGATTACTGTATGAGAGGATATTAAATATGCTGAAATGGTACTGTCTTACTCCCtgagataaattaatgaatataatGACTGTGGTGTATAGGCATATAACGTTTTTGTTatctttttgtaatattttcaatttttgtcTAAGCTATAAATATTTTCTGATATCTGTTGAGTAAGAAATAAACCTGGGTCATTTAAACGCAACAACAGATTTTTAGCCAACATCTAAAGTgtattgctttcattatttCGTAATCCTCGGCACAACCAAGACTTCTGTGCAAATGTTGTTGCATTAAAATTATGTTGTAGGTGGAAATATACCCCTGATGAGAAGGAGAATGAGCGGCAGTTCCTGCTGGACTTACAGTTCATCTGTGACAGGCTGCAGAAACTCCGCATTAGCGATGTGGTCCTGGCTAAGgCCATAAATACCCCTGTGCATCGCCTGGACCCCAGTCTGCTGACAGGGATGAACTCTGTCCCTGACCTTACCCCCTCTCTTGCCAACCTTGGCATACAGCCCATGGGGGGACATGGCCCAGGCTCTTTGCCACCCCAGCCCTCAGCAGAGGGTGCCCGGTGCTACCGGCTGGGCGAGAGGAAGGAGCCGCGAATCATCAACGTGTCATTCACGGATGATATTCAGCTCAACAAGGCCGAGAAGGCATGGAAGCCTACAATTAAGCAGGCTCCCATAGTGGGTGATGACCCCGAGGTCATAAAGACCCAGGAGCTGTTCTGCAGGGTGAACGGTATCCTGAACAAGCTGACCCCACAGATGTTCCAGCCGTTGATGCGTCAAGTGGACGAGCTGACCATTGACACGGAGCAGCGACTCCAGGGTGTCATGGCGCTCATCTTCGAGAAGGCCATCTCCGAACCCAACTTCTCCGCCACATACGCCAATATGTGCCAGTGTCTTCTGAGGCTCAAAGTCCCGAGCGCTGACAAGCCGGGAGAGACGGTGAATTTCCGCACTCTGCTTTTGAACCGCTGCCAGAAGGAGTTTGAGGGCGAGGAGCGGCAGCGTCTACGTGACGAGCTGCAGGAGGCCAAGCGCAAGGCCCAGCGGCGCTCGCTAGGCAATATCAGGTTAATTGGGGAGCTGTTCAAGGTGAAGATGCTGGTGAAGAAAACCATGCACAATTGCATTGTCAAGCTGTTGAAGAACCACGAAGAGTCCCTGGAGTGCCTGTGCCGACTCCTCTCCACTATCGGCAAAGACCTGGACTTGGAGACCGCCAAGCCCCGCATGGACCAGTACTTCAGCCAGATGGAGCTGATCATCAAAGAGAGGAAGACCTCCCCTCGAATCCGCTTCATGCTGCAGGATGTCTTGGACCTGAGAAGAGATAACTGGGTGCCCCGGAGGGGTGACCAGTGTCCTAAGACAATCAACCAGGTCCACGAGGAAGCAGAGCTGGAGGCGCACAGTGAGCAGATCAAGGTGCAACAGCAGCTCATGAGCAAGAAGGACAACCGACGTGGGGGCCCTGGGGGGCCGCGCTCGGCAGcttccgAGACTGGATGGCGCGCTACCGGCACCCTGAAGCGCTGCTCCGCCCTGCAGCAGTCGTCCTCTGCTGCTCCTTCCTCCGTTTTCAGGAGTAGCTCTCGCCGGGATGGCGGTGAGTGTAGTAACCTCTTCAAGCGGCCGGAGCGTCATGAGCGCGGCCAGCACGAACACTCTGAGAGGAGAGAAGCTGGGGATAAGAAAGGCCTGGACAGGATTGACTTGAAGAAACCAAAGTCCATCATTGGGGAGTGTCTCCACCTCAATGACATGAAGCCCTCAGCAGTGGCTCCCCAGCGCTCCCAGCAGGGCGAGAGGAGGGAGCAGCGCAAGGTCATCACCCTGTCATTCTCGCATGAGGTTCAGCTCAACAAGGCCGAGAAGGCATGGAAGCCTACAGTTAAGCAGGCTCCCACAGTGGGTGATGACCCCGAGGTCATTAAGACCCAGGAGCTGTTCCGCAGGGTGAACGGTATCCTGAACAAGCTGACCCCACAGATGTTCCAGCCGTTGATGCGTCAATTGAACGAGCTGACCATCGACACGGAGCAGCGACTCCAGGGTGTCATGGAGCTCATCTTTGAGAAGGCCATCTCCGAACCCAATTTTTGCCCCTCATACGCCAATATGTGCCACTGCCTTCTGAGGTTCAAAGTCCCGACCACTGACAAGCCGGGAGAGATGGTGACTTTCCGCACTCTGCTTTTAAACCGCTGCCAGAAGGAGTTTGAGATGGAGGAGGATGGAGACGAGGTCTtcaagaagaaacagaagatgCTGGATGCATCCTTGGGCGAGGAGCGGCAGCGTCTACGTGACGAGCTGCAGGAGGCCAAGCACAAGGCCCAGCGGCGCTCACTAGGCCACATAAAGTTCTTTGGGGAGCTGTTCAAGGTGAAGATGCTGACAGAGGCCATGATGCACGCCTGCATCTTCAAGCTGTTGAAGAACCATGAAGAGTCCCTGGAGTGCCTGTGCCGACTCCTCTCCACTATCGGCAAAGACCTGGACCTCGAGACAGCCAAGCCCCGCATGGACCAGTACTTCAGCCAGATGGAGCTGATCATCAAAGAGAGGAAGACCTCCTCTCGAATCCGCTTCTTGCTGCAGGACGTCTTGGACCTGAGAAGAGATAACTGGGTGCCCCGGAGGGGTGACCAGGATCCAAAGACAATCGACCAGGTCCACAAGGAAGCAGAGCTGGAAGTGCACCATGAGCAGATCAAGGTGCAGCAGCAGCTCATGAGCAAGAAGGACAACCGACGTGATGCAAACTTCAGCGAAAGTGTCCTGTCACGCGTCGGTCGggccagagcagagcaggcCAGGAAGAGAGGGACTTTTGTGAAAGCACTAGAAATAGAAACACCAGTCCTTCTCTGGCGAAGATGAAAGCATCAACATACGATCATTcaatttctttcccttttctgtttaatctacaaaataaaatgata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU134125 lncRNA upstream 216214 26839441 ~ 26842778 (+) False AMCG00011488
TU134004 lncRNA upstream 607417 26447202 ~ 26451575 (+) True G107128
TU134002 lncRNA upstream 671008 26387748 ~ 26387984 (+) True G107126
TU133952 lncRNA upstream 766545 26277374 ~ 26292447 (+) True G107098
TU133936 lncRNA upstream 856373 26199950 ~ 26202619 (+) True G107084
TU134230 lncRNA downstream 400027 27467404 ~ 27468567 (+) True G107321
TU134242 lncRNA downstream 429950 27497327 ~ 27501442 (+) True G107331
TU134298 lncRNA downstream 546584 27613961 ~ 27615738 (+) True G107382
TU134320 lncRNA downstream 723489 27790866 ~ 27830847 (+) False G107402
TU134321 lncRNA downstream 723489 27790866 ~ 27874138 (+) True G107402
AMCG00011490 mRNA upstream 89709 26958142 ~ 26969283 (+) True AMCG00011490
AMCG00011491 mRNA upstream 135051 26910351 ~ 26923941 (+) True AMCG00011491
AMCG00011488 mRNA upstream 216200 26827321 ~ 26842792 (+) True AMCG00011488
AMCG00011477 mRNA upstream 623534 26413301 ~ 26435458 (+) True AMCG00011477
AMCG00011478 mRNA upstream 649619 26401965 ~ 26409373 (+) True AMCG00011478
AMCG00011494 mRNA downstream 121174 27188551 ~ 27195648 (+) True AMCG00011494
AMCG00011495 mRNA downstream 204221 27271598 ~ 27279308 (+) True AMCG00011495
AMCG00011496 mRNA downstream 212793 27280170 ~ 27283428 (+) True AMCG00011496
AMCG00011498 mRNA downstream 221066 27288443 ~ 27295823 (+) True AMCG00011498
AMCG00011497 mRNA downstream 229954 27297331 ~ 27298573 (+) True AMCG00011497
TU134126 other upstream 228937 26818052 ~ 26830055 (+) False AMCG00011488
TU134100 other upstream 287778 26770438 ~ 26771214 (+) True G107202
TU133992 other upstream 698217 26356167 ~ 26360775 (+) True AMCG00011476
TU133489 other upstream 3305990 23748674 ~ 23753002 (+) True G106711
TU133383 other upstream 3702433 23356062 ~ 23356559 (+) True G106618
TU134311 other downstream 644829 27712206 ~ 27727867 (+) True G107394
TU134734 other downstream 2630224 29697601 ~ 29699419 (+) True G107741
TU134787 other downstream 2790593 29857970 ~ 29875476 (+) True G107784
TU134867 other downstream 3104411 30171788 ~ 30212090 (+) True G107858
TU135008 other downstream 3916602 30983979 ~ 31173789 (+) True AMCG00011551

Expression Profile