RNA id: AMCG00011495


Basic Information

Item Value
RNA id AMCG00011495
length 3205
RNA type mRNA
GC content 0.38
exon number 8
gene id AMCG00011495
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 27271598 ~ 27279308 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCGTCGGGGGTGAGGAGCAGTGTAGTTTCTCTGTGGCTTCGGGCTCTGTTTTCTGACAAGGCTAATTTATTTAgggaaatattttacattttcctattGTTGGGTGTGTGCCCAGTGTCTGTTGTCCATGCCGACATAACTGATGGCAATAGTGAGCACCTGAAACGGGAACACTCGCTTATCAAACCCTACCAAGGGGTGGGAAGCTCATCAGCTCAGTGGGATTTTGGAGGAAGCACGTTAGTGACCAGCCAGTATGTTCGCCTGACTGCGGATGAGCGAAGCAAGCAGGGCTCCATCTGGAACACAGTGCCTTGTTTCCTGAAGGACTGGGAGATGCATGTTCAGTTCAAAGTGCATGGGTCAGGAAAGAAGAATCTCCACGGTGATGGCATTGCCATCTGGTACACCAAAGATAGACTACAACCGGGGCCCGTCTTTGGAAACCGGGACCATTTTGTGGGCCTTGGGATTTTTGTGGATACATTCCGCAACGACATTCACGGAATGGATCGCTCATTCCCTTACATCTCCGCCATGATAAACAATGGCTCCTTGGCGTATGACCATGGAAAGGATGGGCGAATGTCCGAACTCGGGGGTTGTTCTGCGGAGATCAGGAACCGAGATCACGAAACCTACCTGGCCATCCGCTACTCCAAGGGTAGACTCACAGTTATGGTTGATATAGAAGACAAGAATGAATGGAAAGAGTGCCTTGATATCTCTGGAGTCCGGCTTCCCATCGGATACTATTTTGGGTCTTCAGCAGCTACAGGGGACCTTGCTGATAACCATGACATCATCTCTATGAAGCTGTACCAGCTGATGGTGGATCACCCTCCTGAAGAGGACAGTGTGGACTGGACCAAGATTGAGCCCAGTGTCAGCCTACTCAAGTCACCCAAAGACAACATCGACGATCCAACGGGCAATTTCCGGAGCACCCCTCTGACTGGCTGGAAAgtgtttctgctgctgctctgcGCTCTGCTGGGCATCGTGGTCTGTGCAGTAGTGGGCGCTGTTGTGTTCCAGAAACGTCAAGAAAGAAACAAGCGATTTTACTGATGGACAGAACCGGCGACGCTTCAAGAAATTAATGTGAATTTTATTAAATTCGCTGTAAATCGCAGTGTTTATATCTGTAAAAGTGCTGgaaggagagagcgagagattaACTTATGGGATTTTGCGTATATTTGATATGAGGTAGAACTCGCTGTGTTTTAGAGCCAGACAGCTTTGTGacatctaaaaaagaaaaaaagtgagaaGCAGATtaaaaagtctttttttttctttttcaaggaagatgtatttttgaaaaacatgaataaagcTGAGATTTACTTAAGAAACTAAATCAAAGATCTTTCTGAATCTTTGCCTTCAGTTTGTCTTGCATAGATGAATAATCCGTTAATTtcatcaggtttttttttttcccttttttttatttttatccatgcACTGTCCATGATCCATCTTGTTTACATTTGTGCAGTGTTTCTCAACTGCAGAACCTGTTTGAACTGGGAGGTGACGGACtttggaaatgcaaaaaaaaattatatatttacacattaacaTGACTTCGAAAATAACTGTATACAACCTGTACAGAATtttgtacataaaataaactttgacATAAAATGATAACTGATCTGATTACAATCGAAACTGGGTCTGTCTGCATTCACCAGGAATTGCAGTTGAGAACTACTAATGTGAAGACTAatgctggttttattttttaatgcaggttctgttttaattaattggggggaagggggaattttaaacctttaaactgatgttttgaaaaagaaaaacctcttCAAACACatttggtggtggggggggggttgataATTTGATTGGTTGGTAAGGGAGGGGTCAACCTGGTAAAATGTGATAATGTACTACTTCCTGCCTCTAAATAATCATACATTGATATCCAGGATGTGTGTTAAATGTcatgtattttcctttcttgatgtttagaaaaaacaaaacgctGGAAACTTTTAAAGCagttttcaatatttgtttccttttgaaaCCCTTATCAGATCtagtatatgtttgttttttcctcttggGGAGGAATGTGGTATGCATGTTTTCTATTtacttttcaatttcaattgccAGAGTTTTGTTTGGCAATATTGCACTAGCAATCTCAAGAGTTAAACCAGACTTTCCAATAACCTCAGACTGAAACAAAATCctgcacatttaattaatttgaaatttgagTTGGAATTTACTTTTGTGTGATATTGATTGAAAtctaacacacatttaaatctgtAAGTTTGGTAAATGATTGATAAATGATTATAGAAACAATCTATTTATTTGGGTTTGCAAGATGCATTGTCCACTTTTCTGTTATCAGTATTTTTAAGTGggtttactgtttttttgttttgtttttgttagtttattacagttaaatagatttaaaaatttAACTTTACAAGTGTGAATCTTATTCCTAATAATGAATCATGCTCTGTGTGGTTTTACTGCAATTGGTAATTTGGTTTTAAGGTTAtggaagttttttgtttttatcctgtcCAAGAACGTTTACTAAATTATTTGTGTCCCTTTTTGAAGATTTTTAAGTTGTGATTTTTTCTGACAGTGGTGGTATACCTGAAACTGTAGGTCAAAATCAAAGGAAGTCGTCCATCCCTTCACCGCAGAATATTAAATTATGGTTATTTACTACTGGAAATCTATACCTACTAATTGCAATTACATATCTTTTAGTTGTTGATGGAGCACATTTTGTAGTACAGAACAGTATCCAGAAAGTATGTGGTTGATTGTGAAAGGATTTGTGTCCCTTATGTATTGATTCAATCAAGAGCTTCCATTCGTatgatttacatacattttaaaacacattgctGCAAATATTGCCTAACACTGATGGTATTCTCAAGACTATGGTGGCTTTAAAGGGGCTGGGTTTTAAAGATTGTTTATGTAATGTCATGTCTATCGTGAAAATCTTAGAATAACACTTTATCAAAAGAATTTCTTCATATCTAAGAAATTGTCTTTTGAGGCCTTTCTTGTTGAGTTGTTCCTTTGAACCCAGTGTAGTAATCTGCTGTTGATGTAATGGGAAATGGAGATTGGATGGTTCTGGgcataattaaagtaatttaaatttcca

Function

GO: NA

KEGG:

id description
K10082 LMAN2, VIP36; lectin, mannose-binding 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU134125 lncRNA upstream 428820 26839441 ~ 26842778 (+) False AMCG00011488
TU134004 lncRNA upstream 820023 26447202 ~ 26451575 (+) True G107128
TU134002 lncRNA upstream 883614 26387748 ~ 26387984 (+) True G107126
TU133952 lncRNA upstream 979151 26277374 ~ 26292447 (+) True G107098
TU133936 lncRNA upstream 1068979 26199950 ~ 26202619 (+) True G107084
TU134230 lncRNA downstream 188096 27467404 ~ 27468567 (+) True G107321
TU134242 lncRNA downstream 218019 27497327 ~ 27501442 (+) True G107331
TU134298 lncRNA downstream 334653 27613961 ~ 27615738 (+) True G107382
TU134320 lncRNA downstream 511558 27790866 ~ 27830847 (+) False G107402
TU134321 lncRNA downstream 511558 27790866 ~ 27874138 (+) True G107402
AMCG00011494 mRNA upstream 75950 27188551 ~ 27195648 (+) True AMCG00011494
AMCG00011493 mRNA upstream 204221 27058992 ~ 27067377 (+) True AMCG00011493
AMCG00011490 mRNA upstream 302315 26958142 ~ 26969283 (+) True AMCG00011490
AMCG00011491 mRNA upstream 347657 26910351 ~ 26923941 (+) True AMCG00011491
AMCG00011488 mRNA upstream 428806 26827321 ~ 26842792 (+) True AMCG00011488
AMCG00011496 mRNA downstream 862 27280170 ~ 27283428 (+) True AMCG00011496
AMCG00011498 mRNA downstream 9135 27288443 ~ 27295823 (+) True AMCG00011498
AMCG00011497 mRNA downstream 18023 27297331 ~ 27298573 (+) True AMCG00011497
AMCG00011499 mRNA downstream 42364 27321672 ~ 27323945 (+) True AMCG00011499
AMCG00011500 mRNA downstream 193323 27472631 ~ 27481990 (+) True AMCG00011500
TU134126 other upstream 441543 26818052 ~ 26830055 (+) False AMCG00011488
TU134100 other upstream 500384 26770438 ~ 26771214 (+) True G107202
TU133992 other upstream 910823 26356167 ~ 26360775 (+) True AMCG00011476
TU133489 other upstream 3518596 23748674 ~ 23753002 (+) True G106711
TU133383 other upstream 3915039 23356062 ~ 23356559 (+) True G106618
TU134311 other downstream 432898 27712206 ~ 27727867 (+) True G107394
TU134734 other downstream 2418293 29697601 ~ 29699419 (+) True G107741
TU134787 other downstream 2578662 29857970 ~ 29875476 (+) True G107784
TU134867 other downstream 2892480 30171788 ~ 30212090 (+) True G107858
TU135008 other downstream 3704671 30983979 ~ 31173789 (+) True AMCG00011551

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000000_16066787_16081915.mRNA True 4205 mRNA 0.44 18 CI01000000 16066309 ~ 16082483 (+)