RNA id: AMCG00011496


Basic Information

Item Value
RNA id AMCG00011496
length 1028
RNA type mRNA
GC content 0.45
exon number 5
gene id AMCG00011496
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 27280170 ~ 27283428 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTTTGTACTACCTGTGCTCTGTAACCGGTTGTAGAAATGGCTGCTAAAATGAAGTTGAGCGTGttcactgttttgttgttaaaCGTTTTCTACAGTTTAACCTCGGCCCTCTATTTTCACATTGGGGAAACGGAGAAAAAATGTTTCATAGAGGAAATCCCAGACGAAACCATGGTTATAGGAAATTACCGCACTCAGCTCTATGACAAACAGAGAGATGAGTACATGCCTGCTACACAAGGACTGGGGATGTTTGTCGAAGTTAAAGACCCAGATGAGAAGGTGATCCTCTCCCGTCAGTATGGGTCAGAAGGCAGGTTCACTTTCACATCCCACACCCCTGGAGAGCACCAGATCTGCCTGCACTCCAACTCCTCCAAGTTTGCTCTCTTTGCTGGAGGAATGCTGAGGGTTCACCTGGATATCCAAGTTGGTGAACATGCCACTAACTACGCCGAGATTGCAGCCAAGGACAAGCTGACCGAGCTGCAGCTGAGGGTTCGACAGCTCATCGAGCAGGTTGACCAGATCCAAAAAGAGCAGAACTACCAGAGGTATCGTGAGGAGCGTTTTCGACAGACCAGTGAGAGCACCAACCAGAGAGTCCTGTGGTGGTCCATCGTCCAGACCCTGATCCTGGTGGCCATTGGCTTCTGGCAGATGAAACACCTAAAGAGCTTCTTCGAGGCCAAGAAACTCGTCTAGATTGCATTCTTCTTTCCTGTTTATGCGTTTGCAGGTCATGCAGTACAACACACAAAAGGGCAGCATAGTGTTCCTTGTTTTCCCAAAGAACATGAAGCATGGCGTGGTGAGAACCTTTAAACTGTTCAGTTTCTTTTACTATGAGATTCCCCCCCTTTGAGTTCTCAtgacttttttcccctttcccaTTTTCAGTGGTATATATATCTTTTGTTCTATTCTGGGCTTAAATACTTTGAAATCTCTTATTAATGTTCTACACTGGAAGTTGTCAGTATGAACTgccagattattttattttttaaataccttgTTTGAGCTTC

Function

GO:

id name namespace
GO:0006810 transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K20346 TMED4_9_11; p24 family protein alpha

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU134125 lncRNA upstream 437392 26839441 ~ 26842778 (+) False AMCG00011488
TU134004 lncRNA upstream 828595 26447202 ~ 26451575 (+) True G107128
TU134002 lncRNA upstream 892186 26387748 ~ 26387984 (+) True G107126
TU133952 lncRNA upstream 987723 26277374 ~ 26292447 (+) True G107098
TU133936 lncRNA upstream 1077551 26199950 ~ 26202619 (+) True G107084
TU134230 lncRNA downstream 183976 27467404 ~ 27468567 (+) True G107321
TU134242 lncRNA downstream 213899 27497327 ~ 27501442 (+) True G107331
TU134298 lncRNA downstream 330533 27613961 ~ 27615738 (+) True G107382
TU134320 lncRNA downstream 507438 27790866 ~ 27830847 (+) False G107402
TU134321 lncRNA downstream 507438 27790866 ~ 27874138 (+) True G107402
AMCG00011495 mRNA upstream 862 27271598 ~ 27279308 (+) True AMCG00011495
AMCG00011494 mRNA upstream 84522 27188551 ~ 27195648 (+) True AMCG00011494
AMCG00011493 mRNA upstream 212793 27058992 ~ 27067377 (+) True AMCG00011493
AMCG00011490 mRNA upstream 310887 26958142 ~ 26969283 (+) True AMCG00011490
AMCG00011491 mRNA upstream 356229 26910351 ~ 26923941 (+) True AMCG00011491
AMCG00011498 mRNA downstream 5015 27288443 ~ 27295823 (+) True AMCG00011498
AMCG00011497 mRNA downstream 13903 27297331 ~ 27298573 (+) True AMCG00011497
AMCG00011499 mRNA downstream 38244 27321672 ~ 27323945 (+) True AMCG00011499
AMCG00011500 mRNA downstream 189203 27472631 ~ 27481990 (+) True AMCG00011500
AMCG00011502 mRNA downstream 200760 27484188 ~ 27496643 (+) True AMCG00011502
TU134126 other upstream 450115 26818052 ~ 26830055 (+) False AMCG00011488
TU134100 other upstream 508956 26770438 ~ 26771214 (+) True G107202
TU133992 other upstream 919395 26356167 ~ 26360775 (+) True AMCG00011476
TU133489 other upstream 3527168 23748674 ~ 23753002 (+) True G106711
TU133383 other upstream 3923611 23356062 ~ 23356559 (+) True G106618
TU134311 other downstream 428778 27712206 ~ 27727867 (+) True G107394
TU134734 other downstream 2414173 29697601 ~ 29699419 (+) True G107741
TU134787 other downstream 2574542 29857970 ~ 29875476 (+) True G107784
TU134867 other downstream 2888360 30171788 ~ 30212090 (+) True G107858
TU135008 other downstream 3700551 30983979 ~ 31173789 (+) True AMCG00011551

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU285331 True 289 lncRNA 0.47 2 CI01000059 250980 ~ 255004 (-)
mexican tetra (Astyanax mexicanus) TU285331 True 2104 lncRNA 0.40 5 NC_035920.1 37309378 ~ 37314616 (-)