RNA id: AMCG00011499


Basic Information

Item Value
RNA id AMCG00011499
length 351
RNA type mRNA
GC content 0.56
exon number 2
gene id AMCG00011499
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 27321672 ~ 27323945 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GATGACAGCAACCCCGAAAATCTCCTTCTGCACGGCCCGTTCTCCAGAAAGCCGAAACGCATCCGAACCGCGTTTTCCCCCTCGCAGCTGCTGCGGCTGGAGAGGGCGTTTGAGAAGAACCACTATGTGGTGGGAGCGGAGCGGAAACAGCTGGCCAACGGGCTATGTCTGACGGAGACGCAGGTCAAAGTTTGGTTCCAGAACAGAAGGACTAAACATAAGAGGCAGAAGTTGGAGGAAGAATCGCCGGAGTCTCAGCAGAAACGGAAAGGCAGCCAACACGTTAACCGGTGGAGGGTGGCGACCAGACAAGGCAGCCCTGAAGACATTGACGTCATATCAGAGGACTGA

Function

GO:

id name namespace
GO:0021537 telencephalon development biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0021862 early neuron differentiation in forebrain biological_process
GO:0021952 central nervous system projection neuron axonogenesis biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09317 EMX; homeobox protein EMX

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU134125 lncRNA upstream 478894 26839441 ~ 26842778 (+) False AMCG00011488
TU134004 lncRNA upstream 870097 26447202 ~ 26451575 (+) True G107128
TU134002 lncRNA upstream 933688 26387748 ~ 26387984 (+) True G107126
TU133952 lncRNA upstream 1029225 26277374 ~ 26292447 (+) True G107098
TU133936 lncRNA upstream 1119053 26199950 ~ 26202619 (+) True G107084
TU134230 lncRNA downstream 143459 27467404 ~ 27468567 (+) True G107321
TU134242 lncRNA downstream 173382 27497327 ~ 27501442 (+) True G107331
TU134298 lncRNA downstream 290016 27613961 ~ 27615738 (+) True G107382
TU134320 lncRNA downstream 466921 27790866 ~ 27830847 (+) False G107402
TU134321 lncRNA downstream 466921 27790866 ~ 27874138 (+) True G107402
AMCG00011497 mRNA upstream 23099 27297331 ~ 27298573 (+) True AMCG00011497
AMCG00011498 mRNA upstream 25849 27288443 ~ 27295823 (+) True AMCG00011498
AMCG00011496 mRNA upstream 38244 27280170 ~ 27283428 (+) True AMCG00011496
AMCG00011495 mRNA upstream 42364 27271598 ~ 27279308 (+) True AMCG00011495
AMCG00011494 mRNA upstream 126024 27188551 ~ 27195648 (+) True AMCG00011494
AMCG00011500 mRNA downstream 148686 27472631 ~ 27481990 (+) True AMCG00011500
AMCG00011502 mRNA downstream 160243 27484188 ~ 27496643 (+) True AMCG00011502
AMCG00011505 mRNA downstream 232355 27556300 ~ 27583803 (+) True AMCG00011505
AMCG00011504 mRNA downstream 267710 27591655 ~ 27595004 (+) True AMCG00011504
AMCG00011510 mRNA downstream 571571 27895516 ~ 27906851 (+) True AMCG00011510
TU134126 other upstream 491617 26818052 ~ 26830055 (+) False AMCG00011488
TU134100 other upstream 550458 26770438 ~ 26771214 (+) True G107202
TU133992 other upstream 960897 26356167 ~ 26360775 (+) True AMCG00011476
TU133489 other upstream 3568670 23748674 ~ 23753002 (+) True G106711
TU133383 other upstream 3965113 23356062 ~ 23356559 (+) True G106618
TU134311 other downstream 388261 27712206 ~ 27727867 (+) True G107394
TU134734 other downstream 2373656 29697601 ~ 29699419 (+) True G107741
TU134787 other downstream 2534025 29857970 ~ 29875476 (+) True G107784
TU134867 other downstream 2847843 30171788 ~ 30212090 (+) True G107858
TU135008 other downstream 3660034 30983979 ~ 31173789 (+) True AMCG00011551

Expression Profile