RNA id: AMCG00011500


Basic Information

Item Value
RNA id AMCG00011500
length 4160
RNA type mRNA
GC content 0.41
exon number 10
gene id AMCG00011500
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 27472631 ~ 27481990 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGGTGAAGGTCTGAACCATTATGAGAAAATCGGAGGGaggaacatttatttcaataaatatcaaaaaacaacaacagaaaatgcCAGTATATCAGTCAAgagcaaaaatataatttaaataaacagatgtaTGCAAACATTTGGATTTAGTGGTGGAAATGCGAAGGAAATGAGCAACAGAAGGAGCATCACGCCAGTCATTTGGCAAATAATGGCAACGTCCAATGTatgtttcaatgtatatttacacaggAAGTGCTGTTAAAGGGGCAGCCGGTAGAGAACTCAGTGTTTTGACGGCAGGTGGGCAGCGGCTCGGCAGGACACGTGTGGCGAGTTCTGCAGCAATGGagcagtgtgcgtgtgtggagCGCGAGCTGGAGAAGGTGCTGCACCGCTTCGTCATGTACGGACACCTGTCTGAGGAGAGCCTGGACGAGCTGCTCAGATATGTGTGCGAGCTCCGGGGTCAGCTGGTTACCTTCGGTGTACAAGATGCTGACCTGTCCGTGCTCTCCCAGTCCATGGCCCAGTGCTGTAAGAACATTAAAGACACGGTACAGATGCTGGCTTCGAGACACAAGGACATCCATGGCAGTGTCTCCAAAGTTGGAAAAGCCATTGACAGGAATTTCGATGCAGAGGTGAGTGCAGTGGTGGCAGAAACGGTGTGGGATTCCCAAGACAGACAGAAGTTCCTCAGCGAATCCATTGTGGAGCACCTGTATCGCCAAGGCATGCTGAGTGTTGCTGAGGACCTCTGTCAGGAGTCTGGTGTGGTTATTGATATGAGCTTGAAACAGCCGTTTCTGGAGTTAAACCGAATCCTAGAAGCATTGAGGATGCAGGACCTTAGACCAGCGTTAGAGTGGGCTGTGGCAAACCGCCAGCGGCTCCTGGATCTCAACAGCACTCTGGAGTTCAAGCTGCACCGGCTTTACTTCATCAGCCTGCTGAACGGAGGCATGGGCAACCAGCTGGAGGCCCTGCAGTATGCCCGTCACTTCCAGCCTTTTGCCGCCCAGCACCAGAGAGATATCCAGATTCTGATGGGTAGTCTGGTGTACCTGCGGCACGGCATCGAGAACTCCCCCTACCGCAGTCTCCTGGAGACCAACCAATGGGCTGAGATCTGCAACATCTTCACCAGAGACGCCTGTGCCCTGCTGGGCCTCTCCGTGGAATCCCCTCTCAGTGTTAGCTTTGCCTCGGGGTGCATGGCTTTACCAGTGCTGATGAACATCAAGCAAGTGATTGAGCAGAGGCAGTGCAGCGGGGTTTGGACCCACAAGGACGAGCTGCCgATTGAGATCGACCTGGGCAAGAAATGCTGGTATCACTCTGTATTTGCCTGCCCCATTCTGAGGCAGCAAACATCAGAAAGCAACCCTCCCATGAAGCTCATCTGCGGGCATATTAAAATGTCCATATTGCCCAATGGAGCAGAACCCCTCAGATGCCAAACAGATATTCTTTTGATGTCAACAGGGGCACGAGGCAGACTGGCGTTTCCTGGAGATGCCTTCAGGACCCACCTTCACGGGCACAGCATTGCCTTTGGTGGTGGTCAAAGGCTAAGCCTTTATAGTGTACTATACCCTCCCTTCACACACTATAATTAGTTTACAGACTCCGTGTTTATGCTAGGGGTGTACCAGTAGGCAGATTAGTGTACTTCAtcaaatgaatatttaaaaaaacattaccatTCAGTTCCTCTGCCGTCTGGTACTGTAgcgtttaaaaaatataaaaataaaaaaagctactTTTACTTTAGTTTCAGGTTATTTAGTTTTCCCCCTGGATTGAAGCTTTTGCTgtttgttcaattaaattattaaaagcatgaGGTGAATGATTTTAAAGGACACGGCTGCCAGTGGCTACTGGTAGTTACTGCACATAAAAGGGCCatcaaattaagtaattgttcTAAATAGTTCATCTGTACCTATCGgctatagaaataaatattaggCTTCAATATATCcgtatgtaaaatataatgatagATCTGGTGTCTGTTTTTTGCAGTCATAAGCAAAGCAGTTATACCACAGTGAGCACATATTCCAGCACTCGTAACATCAtgcatttggaatattttacaaaaacaccACAAGCTTTATTCTTCAGTTGATCGATGGGACCGTTGTGGCGAGAATATTTCACCATTGGTTACAATGTGAAGcagtgaaatgtaataaatgcttGGCGAGATTGATGGATCTAAGCTAATTGTGTGGGCCAGTGTTGAAGTGGACTGTAGGGATCTTGGGAACAGTAATCAATTTACAAGGGACTAGGGAAGCCATGTTTCATGTTCTGTGAGTGCATCACAACTGTTTCAAGCGTGAAACCAATCCACTGTTAAATGTGCAGTAACTGCTTCTCTGTTTTGAATCTccacactttattatttaagacggtaaaattaataaaagctGTTGAATCACTTGATCATTTACCATTCAGTAGATGACAGAGCAGGATAATAATTCGGTCACTTTCATTTATACTCCTTTTTATGGGCCTGATCCACACTAATGCCATGTCTACGGTTTGTAATTACAGAGTGCATGGGAATGCTATAGCAATTATAATCCTTAAGGACAGTGTGGTGTGAACAACTAAAAACAGTGGTGGCTTTAGATCTTGAGACCTTTtggtgcattttttattttgttttggcataTTTGCTTTCTTAATCATTGATCTAACttcaatataaacatgttttccttAATAACTGATTAGAAGTGGTTTGGCACGTTGTCCATTTATAATTTCCTTGGTCTTGATTTGCAGTCACATAATGCTGTCTTATCACTGACACTCAATATTCAGTTATTAAATGCATATGCCCATTTTTAATTGAGGTTGAATTTTTTTGTGAGTGTTCTGCTGTGCTCCATAGTTTGTGTTCTATAGCCACAAACCTTTAATGAATTGATAAATCCACAAAATCCGGTGAGCTGTGcactaaattaaatgtcttgATTCCCCACTGAACttggaaatatgttttatatcatTAAAACTGACACCCTGACTTTGACACAGTTCTGTAGCTACTAATCTCCTGATGCTCAAGAAATGATTAACCACAATATGATGTCTGGGTAAATCTCTGAATCTGCCCCatctgcttttgaaaaatgtgtgtttttgaaattcTGCACTCCTTATTAAGGGGTGTGTTTAGAGGCATCATATCTATACATGGactaattgtgtttattttggcatccttttttccatttgcttccGCAGTCTCTGCTTGTCTAATTCTTTTTAGGTCAGTCCAGCAGCAGGTAGGGTTCTCTTTCTTTTGAATCTGGATCATGACTTCAAAAGTCAAAGGATCCGTCTTAAATggcaagttaaaaataaatatttattttttcatcagaAGTATCTATTTATCAGAGCTATAACCATTTTGTTCCTATAGAGAAAGGAATATATTCTAAATGGTCAGTATTCTAAGAccactgaatattattattaataatattaatgaatattcttatacatattattattctaaATCTACTGTTATAGCCTCATATGAAAGGCTGCTCCTAAGGAACAGAATGCATCATCACAGATCTTGTATGGCATGTGAAAGTTTCCCACCTAGAGCTCCTTACTAGCCTTTCTGTCATGAGCCACCACTGTTTACATGCTagtttaatacagtacagtacaggagCACAAGCTGCAATAGACCTGAAATTGTCCAGAATCATAAAGAACTATAAACTAGCCACATCAGGCCCTGAGTGTTGCAAGTTAAAAGCGTTTATTATAAAAGATCATGGgagggtgttttattttttccttttatttttgtgtttaatttttaattttgttttgtttttgtcacttGTGTTTTCAGACTGAGTGTTTTCATGGTAGACAATCTATCATTGCCATCACTTGTGCCCACCAGGCTTTGATAAACAGTAACTAGGGCGTTGAGCGTGGGCAGATAGTCTACTTGAGTTTGTACCTGAACATCAATATGTAGCAACTAAACATTGTGCATTTCCTGGTTACCTTTATGTTAATGcaatttttattgtaaatatttatccTTTAATAGTAAGTTTCATATTACACATGTATCTTAATAAAAGAAGACTTTCTACTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU134230 lncRNA upstream 4064 27467404 ~ 27468567 (+) True G107321
TU134125 lncRNA upstream 629853 26839441 ~ 26842778 (+) False AMCG00011488
TU134004 lncRNA upstream 1021056 26447202 ~ 26451575 (+) True G107128
TU134002 lncRNA upstream 1084647 26387748 ~ 26387984 (+) True G107126
TU133952 lncRNA upstream 1180184 26277374 ~ 26292447 (+) True G107098
TU134242 lncRNA downstream 15337 27497327 ~ 27501442 (+) True G107331
TU134298 lncRNA downstream 131971 27613961 ~ 27615738 (+) True G107382
TU134320 lncRNA downstream 308876 27790866 ~ 27830847 (+) False G107402
TU134321 lncRNA downstream 308876 27790866 ~ 27874138 (+) True G107402
TU134329 lncRNA downstream 401105 27883095 ~ 27883396 (+) True G107408
AMCG00011499 mRNA upstream 148686 27321672 ~ 27323945 (+) True AMCG00011499
AMCG00011497 mRNA upstream 174058 27297331 ~ 27298573 (+) True AMCG00011497
AMCG00011498 mRNA upstream 176808 27288443 ~ 27295823 (+) True AMCG00011498
AMCG00011496 mRNA upstream 189203 27280170 ~ 27283428 (+) True AMCG00011496
AMCG00011495 mRNA upstream 193323 27271598 ~ 27279308 (+) True AMCG00011495
AMCG00011502 mRNA downstream 2198 27484188 ~ 27496643 (+) True AMCG00011502
AMCG00011505 mRNA downstream 74310 27556300 ~ 27583803 (+) True AMCG00011505
AMCG00011504 mRNA downstream 109665 27591655 ~ 27595004 (+) True AMCG00011504
AMCG00011510 mRNA downstream 413526 27895516 ~ 27906851 (+) True AMCG00011510
AMCG00011511 mRNA downstream 426402 27908392 ~ 27915999 (+) True AMCG00011511
TU134126 other upstream 642576 26818052 ~ 26830055 (+) False AMCG00011488
TU134100 other upstream 701417 26770438 ~ 26771214 (+) True G107202
TU133992 other upstream 1111856 26356167 ~ 26360775 (+) True AMCG00011476
TU133489 other upstream 3719629 23748674 ~ 23753002 (+) True G106711
TU133383 other upstream 4116072 23356062 ~ 23356559 (+) True G106618
TU134311 other downstream 230216 27712206 ~ 27727867 (+) True G107394
TU134734 other downstream 2215611 29697601 ~ 29699419 (+) True G107741
TU134787 other downstream 2375980 29857970 ~ 29875476 (+) True G107784
TU134867 other downstream 2689798 30171788 ~ 30212090 (+) True G107858
TU135008 other downstream 3501989 30983979 ~ 31173789 (+) True AMCG00011551

Expression Profile