RNA id: AMCG00011507


Basic Information

Item Value
RNA id AMCG00011507
length 1218
RNA type mRNA
GC content 0.54
exon number 8
gene id AMCG00011507
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 27620509 ~ 27639480 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGTGCGACTGCCCAAGGTGAGGATCCTGCGCACCAAAAAGAGGGAGGGTCTGATCCGGACACGGCTGCTGGGAGCCTCCATGGCCAAGGGAGAAGTCATCACCTTCCTGGACTCGCATTGCGAGGCCAATGTCAACTGGTTGCCTCCTCTGCTAGATCGCATCGCCCAGAATCGCAAGACCATCGTGTGCCCAATGATTGACGTTATCGACCACGACAACTTTGGCTATGAAACGCAAGCAGGAGATGCCATGAGAGGAGCCTTCGACTGGGAGATGTACTACAAACGGATCCCCATCCCCCCCGAGATCCAGAGGGAAGATCCCAGCGAACCTTTCGAGTCGCCTGTCATGGCTGGAGGACTCTTTGCTGTGGAGAAGAAGTGGTTCTGGGAGTTGGGCGGCTATGACACTGGTCTGGAAATCTGGGGTGGAGAACAGTATGAAATCTCCTTTAAGGTATGGATGTGTGGAGGACGTATGGAAGATATTCCTTGCTCCAGAGTGGGACACATATACAGGAAATATGTTCCCTACAAGGTCCCTGGTGGGGTGAGCCTGGCACGGAACCTGAAGCGGGTGGCAGAGGTGTGGATGGACGAATACGCCGAGTACATCTACCAGCGCCGGCCCGAGTACAGGCACCTGTCTGCCGGAGACATGACCGCCCAGAAGGAACTGAGGAACAACCTGAACTGCAAGAATTTCAAGTGGTTCATGACAGAGGTGGCCTGGGACCTCCCCAAACACTATCCTCCCGTGGAACCTCCTGCCGCTGCTTGGGGAGAGCTGCGCAATGTGGGCAGTGGGATGTGCGTGGAGAGCAAGCACAGCGCCTCCGGCTCCCCAGTACGCATGGAGACCTGCCTGAAGGGACGAGGGGAGGCAGGCTGGAGTCATGGCCAGGTCTTCACGTTTGGCTGGAGGGAAGACATACGAGTTGGAGACCCCCTGCATACTAAAAAAGTATGTTTCGATGCCATTTCCCACAACAGCCCTGTTACTCTATACGACTGTCACGGGATGAAAGGGAACCAGCTATGGAGATACAGGAAGGACAAGAGCATATACCATCCCATCAGCAACAGCTGTATGGACTGCAGCACCGCAGACAAAAGAGTTTTTATGAACAGCTGTGACTCGACTTCTGCAACGCAGCAGTGGGTTTTTGAGAAAACCAACTCAACTATTTTGGAACAGTTCAACAGGAACAACTGA

Function

GO:

id name namespace
GO:0006486 protein glycosylation biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016757 transferase activity, transferring glycosyl groups molecular_function

KEGG:

id description
K00710 GALNT; polypeptide N-acetylgalactosaminyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU134299 lncRNA downstream 4771 27613935 ~ 27615738 (-) True G107383
TU134260 lncRNA downstream 70642 27547207 ~ 27549867 (-) True G107348
TU134213 lncRNA downstream 211772 27408518 ~ 27408737 (-) True G107308
TU134193 lncRNA downstream 328196 27281954 ~ 27292313 (-) False G107290
TU134192 lncRNA downstream 334052 27247739 ~ 27286457 (-) True G107290
TU134325 lncRNA upstream 151415 27790895 ~ 27845007 (-) False G107406
TU134327 lncRNA upstream 151415 27790895 ~ 27839465 (-) True G107406
TU134330 lncRNA upstream 243568 27883048 ~ 27883580 (-) True G107409
TU134332 lncRNA upstream 247987 27887467 ~ 27887769 (-) True G107411
TU134413 lncRNA upstream 923587 28563067 ~ 28563577 (-) True G107471
AMCG00011506 mRNA downstream 13521 27598114 ~ 27606988 (-) True AMCG00011506
AMCG00011503 mRNA downstream 90556 27497309 ~ 27529953 (-) True AMCG00011503
AMCG00011501 mRNA downstream 197018 27415188 ~ 27423491 (-) True AMCG00011501
AMCG00011492 mRNA downstream 677126 26931386 ~ 26943383 (-) True AMCG00011492
AMCG00011489 mRNA downstream 802151 26804882 ~ 26818358 (-) True AMCG00011489
AMCG00011508 mRNA upstream 30315 27669795 ~ 27679146 (-) True AMCG00011508
AMCG00011509 mRNA upstream 72660 27712140 ~ 27712957 (-) True AMCG00011509
AMCG00011514 mRNA upstream 252277 27891757 ~ 27895311 (-) True AMCG00011514
AMCG00011515 mRNA upstream 277453 27916933 ~ 27953143 (-) True AMCG00011515
AMCG00011517 mRNA upstream 384750 28024230 ~ 28025901 (-) True AMCG00011517
TU134083 other downstream 1104002 26506943 ~ 26516507 (-) True AMCG00011485
TU133710 other downstream 2602177 25012205 ~ 25018332 (-) True AMCG00011445
TU133362 other downstream 4559543 23053316 ~ 23060966 (-) True AMCG00011409
TU132729 other downstream 7752607 19865614 ~ 19867902 (-) True AMCG00011356
TU132572 other downstream 8207494 19410368 ~ 19413015 (-) False G105970
TU134703 other upstream 1985604 29625084 ~ 29625387 (-) True G107713

Expression Profile