RNA id: AMCG00011509


Basic Information

Item Value
RNA id AMCG00011509
length 336
RNA type mRNA
GC content 0.60
exon number 3
gene id AMCG00011509
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 27712140 ~ 27712957 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCGCTACGACTCTTATCGAGGCTCTATCGCGGAAGTGCCCGCAGTTCGAGCAACTGAGTCTCAGAGCGAAAGTTCTCCCCACCTGGCGCGGACGGGAAGAGGCTCCGTCTCCGCAGAACAAACCATGAGGCGGAAAGAAAAGCGGCTGCTCCAGGTCGCAGGGCTGTTGATCGCCGCTCTCCTGTTCCTGCCCAACGTGGGGCTGTGGTCTCTGTACCGAGACAGGGTGTTTGAGAACTCGCCGGAATTGGTGGAAGGGGCTGCCGGGCTTCCCGGTATACAGGCCACGTACTCCAACAGTGCCAGCTCCAGGATGTCCGGGAAGATGACTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU134299 lncRNA downstream 96402 27613935 ~ 27615738 (-) True G107383
TU134260 lncRNA downstream 162273 27547207 ~ 27549867 (-) True G107348
TU134213 lncRNA downstream 303403 27408518 ~ 27408737 (-) True G107308
TU134193 lncRNA downstream 419827 27281954 ~ 27292313 (-) False G107290
TU134199 lncRNA downstream 432832 27276983 ~ 27279308 (-) True G107296
TU134325 lncRNA upstream 77938 27790895 ~ 27845007 (-) False G107406
TU134327 lncRNA upstream 77938 27790895 ~ 27839465 (-) True G107406
TU134330 lncRNA upstream 170091 27883048 ~ 27883580 (-) True G107409
TU134332 lncRNA upstream 174510 27887467 ~ 27887769 (-) True G107411
TU134413 lncRNA upstream 850110 28563067 ~ 28563577 (-) True G107471
AMCG00011508 mRNA downstream 32994 27669795 ~ 27679146 (-) True AMCG00011508
AMCG00011507 mRNA downstream 72660 27620509 ~ 27639480 (-) True AMCG00011507
AMCG00011506 mRNA downstream 105152 27598114 ~ 27606988 (-) True AMCG00011506
AMCG00011503 mRNA downstream 182187 27497309 ~ 27529953 (-) True AMCG00011503
AMCG00011501 mRNA downstream 288649 27415188 ~ 27423491 (-) True AMCG00011501
AMCG00011514 mRNA upstream 178800 27891757 ~ 27895311 (-) True AMCG00011514
AMCG00011515 mRNA upstream 203976 27916933 ~ 27953143 (-) True AMCG00011515
AMCG00011517 mRNA upstream 311273 28024230 ~ 28025901 (-) True AMCG00011517
AMCG00011520 mRNA upstream 1085273 28798230 ~ 28816286 (-) True AMCG00011520
AMCG00011521 mRNA upstream 1110701 28823658 ~ 28851487 (-) True AMCG00011521
TU134083 other downstream 1195633 26506943 ~ 26516507 (-) True AMCG00011485
TU133710 other downstream 2693808 25012205 ~ 25018332 (-) True AMCG00011445
TU133362 other downstream 4651174 23053316 ~ 23060966 (-) True AMCG00011409
TU132729 other downstream 7844238 19865614 ~ 19867902 (-) True AMCG00011356
TU132572 other downstream 8299125 19410368 ~ 19413015 (-) False G105970
TU134703 other upstream 1912127 29625084 ~ 29625387 (-) True G107713

Expression Profile