RNA id: AMCG00011510


Basic Information

Item Value
RNA id AMCG00011510
length 3856
RNA type mRNA
GC content 0.40
exon number 15
gene id AMCG00011510
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 27895516 ~ 27906851 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGGTGaaatacaaaagggaaaagaagGAATGGTTTCCAAAGTCCAGTGACGTGGCTGAGAATACAACATCTGGTGCCCAGGACGCACATCACTGCAATTGCATTATAGGAATGTTTTAGGATGTCAGAAGGTGGAAGCTCCAGTGACCCTGCAGTAGAGAGGGGAATCTCAGAGATGGACTCTGTAGAGCACACTCCCTCTCCAGCAGCTGATGCTGGTGATGCCCATAAGGCATGTGAGCAGGGTGTTGCAGAAGAGACGCCTGTTCGCGTGACCCGCAAAAGACCCGAAAGCAAACCTCCTCTTGATCCAACAGAGCAGCAAGTGGAGAAACAGGCAGAGGAAGCCCAAAAGGATACCAGCTCAACCTCTGTGTCTCAGGGGGGCTGGGGTTATTGGGGGAGCTGGGGCAAGTCTCTCCTGTCCAGTGCCACAGCCACGGTGGCCAATATGGGCCAAGGAATCTCCCAGGTTATTGAAAAAGCAGAAACATCGCTTGGGATACCAAACCCTACAGATCTCTCCACGCAAATCAAAGAAGAAGATGAAACGCAAGAAGTGGGTGAACTAAACAGGGAAGAAGCCAGCACTTCTAAAGAAAGTTCCGGTGCTTCTGCAATGGGAGGGGCGATGGGGATGTTTTCCTCTTTCTCCAGTGTTGTTCAGAGCACAGGGAAGACTGTAATAACTGGTGGTCTGGATGCCTTAGAGTTCATAGGCAAAAAGACTATGGATGTTATAGCAGAGGGTGATCCAGGGTTTAAGAAAACGAAAGGACTGATGATTAGAACGTCGACTTTATCCCAGGTTTTACGAGaagcgaaagagagagaagagaagcaGACTGCTCAACAGGTGTCGGCAGACATGGACAGGAAGGCCCATTATGGAATACTGTTCGATGAATTCCAGGGCCTGTCTCACCTGGAGGCGCTGGAGCTGCTGTCCAGGGAAAGTGATGCAAAGGTGAAATCTATTCTCACTACATGGTCTGGTGAGGAATTAGCCAAGATGAAAGAGGAATTGGAGCTTATCAAAGAAGCGTTTTCATTGGTAGAGTTTGATGACGAGGAAGAGGACGATAGAAAAGGTGCGATTTCAGTTGAACCTATAGATGATGAAGGCACTGAATTTGTGAAGGAATTAACTGATGTCTTGGCAGAACTACACATATCAACAACGGCAGAGAAGCTTGGCACAGCCAGAAAGAATGCAGATGATTGGATCTCTCAAATAAATGTTCCAGCTGAAGAATCAAAGATGCAAGATGAGAAAGAAGCGACAGAAGGTGTCAGTTCAGAAGTGGTTGCTCAGTGCACTGTGGAGGAAATTCACACGTCTGCAATTAGGAGCCTGGCTGAGCTGACGGCCAGATCAATAGAACAATTCCACAAAGTGGCCGAACTGATCCTTCACCGTCGCAGTCGGGAGGTGATGGCCTTGGCACAAGCCAAAGCTCTCTCACAAATGACGATCATTTTATGCAAAGAGATATCGTTGCTGTCCAAGAAGTTTACTACTTGTTTGGCTACAGTGGGGtcaAATGAAAAGGGTGACATCCTTAATCCACTGATAACAGGAGTCTTTTTAGAGGCTTCCAACAGTGCTTCTTACATTCAGGATGCTTTCCAGCTGTTACTGCCAGTCTTAGAGGTTTCTCATATCCAGACAAGTGTAAACACTGCACAACAGTGAACGATGCTTGGATTTCACTCATGCCAAAGCTAAAGGGAAGTCCActgcaaatggaaaatggagATACCTCTGTATCTTCTGAGAAGCAGGCCCGGCTACATTAACTTTAATACAACTTGAGACAAACTGACTGTCAGTAAACCTAATGCAATGTAAACCTGTTCTGTATACCTGACATCTGTGTACCTCACGTGTGTTAAAAGAACGAAACATTAGTATTAGATACTAGGTTGCCAAAATGTTTGTATTGCCCTATGCTAAACATGAATCCCTCACATCCAACATGGAGATGGAGACgagatttaatttgattgcttCTGAACCACAGAATAAGTTTCTGTTTTTACCTACATTATACTTACGATATTTTTTAAGCGAGTTCTATATTCGGCTAAAATCAATAATCTATTTGCTTCTTTTGATACATGTCCTTTATTTCTTTACTCCAGATAATTACTAGTTTTATCACATTGTTTACTGCTTGGGAGTTAAGATCAAGTGGTTATTCTGTGAGGGTCAGGTTATTGATTAGGTTAAATAATGATGACGGAGTATTGTCCttttttcagtcattttattaaaagctGCTATTTTACATATGGTTATGCTTATGTTTGATggcaaaatataaattttaccATAGTAATGCATTCTCTTAATATACATTAGCAGGAACAATAAAGTATATCTTCCTAAACAAATTGGGCCATATAAAATAGAAGTAAGGAATTTGTACATGGAAAACAAGATCTGTGTGGCGATGATCTGAACATTAGCATATCATAGTGGCCATGATTTCATGCTGTAGATATCACGTGGTTTGTTTAGTATGTGTtctctattttatttctgtattatttttgtttcttgtgacTGTCAGTGTtatattaagttaaaaaaaatgctacaaaaGAAGGGTgtaacattcatatttaatctaTTCTATTTCAAAAGATAtggaaaaagtcaaattaaaatgtcagaaactgtattttcccaaaatgaaaatggctTAGGTATTGCAGCATTTTCCTAAAACAGAACTTCTGGAGATTTAAAGTGTTTGAACCCAGAGttattattgatgtattattaaGTATGGTGCATaagaaatttattttttctaaatgtctTCAGGTGTGAATGAGATTTATGAAGTATGGTTTTCGGGGGGGTTGATAAAATAGAACTGGAGAGGTAATGGTTTTGGAATGATCTCTAGATAATTGGAACATTTTGCTGCAGAGGTAAGCATTAATTGCTCATTGGAAAATCATTAGTCAAAGAAGCCAGGACATCAGCAATGTGTGTCCCTTCAGACTGCACAGTCCAACATTTTGAGCCACAGACTAGAATTACAATTGTATGTATACTATACATCATATAACTTTCTGCTCATTTGTTGGTATTTTCAttccaaaataattataatggaatatattttgtaatgctccATGTGCAAAAAGCTTCCTggtaaatattaaaacacactttAAGACGTCTAACGTTCTTTTAAAATCAAGCTGCTTCCTAAAACTTGCTTTCTCCTGTAATTGAGTGTccccattttttaaattttgaaatgATCGGAAAAACAAGTTACATGTCAtacttaaaatattgttttctctgATGTAACAAAACTACATAGCGATTTAGAAAATGCACTGGAAATGGAATGTCTTCACACTGAAAGTGATTATCTGTCATCAGTAATTATGGTGGGGTGGGGGCAGTagataattatgtttttcttgtagTAACTGCATAAAGCATGCGGTATAGGTGGTGTGTAAAGAAGTGGAACACTGTACTGCTTAGGTGAAGAGGAAATTATATTGGGTGAATCTAGAAAGATTCTTTGTAATTCCACCAATATTGGTTTCTAAACTCCTGTCTCATATTGCCATCCAGCTATTCAGAGATGTGGCCATTTTCAACACTTTCCTTCTTAACTTCTGACCATTCTTTGGCATCATTAAACAGGATTGTAAAATAGACAAAATGCATACAGATGCATATAACAATTCACACACCTtaccaatttaaaaatgacattttgtgcTTTAGAAGGAACAAACACTTAAACCTCACCCTTAATCTGAATTAAGGCTTTTTTCTCCAAAATGCTAAGCCACTATGCATTCAGCATCCATGCCTG

Function

GO: NA

KEGG:

id description
ko04144 Endocytosis

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU134329 lncRNA upstream 12120 27883095 ~ 27883396 (+) True G107408
TU134321 lncRNA upstream 21378 27790866 ~ 27874138 (+) True G107402
TU134320 lncRNA upstream 64669 27790866 ~ 27830847 (+) False G107402
TU134298 lncRNA upstream 279778 27613961 ~ 27615738 (+) True G107382
TU134242 lncRNA upstream 394074 27497327 ~ 27501442 (+) True G107331
TU134387 lncRNA downstream 381299 28288150 ~ 28288391 (+) True G107450
TU134446 lncRNA downstream 759315 28666166 ~ 28666386 (+) True G107502
TU134459 lncRNA downstream 807272 28714123 ~ 28714489 (+) True G107513
TU134477 lncRNA downstream 889036 28795887 ~ 28863757 (+) True G107530
TU134502 lncRNA downstream 963719 28870570 ~ 28876355 (+) False AMCG00011519
AMCG00011504 mRNA upstream 300512 27591655 ~ 27595004 (+) True AMCG00011504
AMCG00011505 mRNA upstream 311713 27556300 ~ 27583803 (+) True AMCG00011505
AMCG00011502 mRNA upstream 398873 27484188 ~ 27496643 (+) True AMCG00011502
AMCG00011500 mRNA upstream 413526 27472631 ~ 27481990 (+) True AMCG00011500
AMCG00011499 mRNA upstream 571571 27321672 ~ 27323945 (+) True AMCG00011499
AMCG00011511 mRNA downstream 1541 27908392 ~ 27915999 (+) True AMCG00011511
AMCG00011512 mRNA downstream 45448 27952299 ~ 27958923 (+) True AMCG00011512
AMCG00011516 mRNA downstream 641652 28548503 ~ 28556689 (+) True AMCG00011516
AMCG00011513 mRNA downstream 664771 28571622 ~ 28574341 (+) True AMCG00011513
AMCG00011518 mRNA downstream 870182 28777033 ~ 28789389 (+) True AMCG00011518
TU134311 other upstream 167649 27712206 ~ 27727867 (+) True G107394
TU134126 other upstream 1065461 26818052 ~ 26830055 (+) False AMCG00011488
TU134100 other upstream 1124302 26770438 ~ 26771214 (+) True G107202
TU133992 other upstream 1534741 26356167 ~ 26360775 (+) True AMCG00011476
TU133489 other upstream 4142514 23748674 ~ 23753002 (+) True G106711
TU134734 other downstream 1790750 29697601 ~ 29699419 (+) True G107741
TU134787 other downstream 1951119 29857970 ~ 29875476 (+) True G107784
TU134867 other downstream 2264937 30171788 ~ 30212090 (+) True G107858
TU135008 other downstream 3077128 30983979 ~ 31173789 (+) True AMCG00011551

Expression Profile