RNA id: AMCG00011515


Basic Information

Item Value
RNA id AMCG00011515
length 4856
RNA type mRNA
GC content 0.50
exon number 29
gene id AMCG00011515
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 27916933 ~ 27953143 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AACGCTTATAGCTTTAATgatgATGAAGTTTATCCCTCCTGCCTTCCTGTAGTCTGTTTACGACAATCTAGTTGCTGTACGGCTGTCGTTCTGTTTGTTGCAGCGGCATGAGCAGTGGAGAAGGTCCCATTCCTAACAGCTCGGCAGCAACGTGTTGTATGATGAACTTCAGAGTCTAATTTGATTGAATGCTATTGTCTGATTTACAATGCCCGAGAGACTTCTGCCAGCGTCTCCCAACTGGTACTGCTCCAGGTCCAGTGACGCGAATGCCAAGGGAGTGTTTGGATTTGGGGCTAAAAACTCAGTATATCTTATTAGCATCACTTCATCGTCGCCTGTTGTCGTGGgTGAACTGATAGGCCACAGAGAGCGTGTATCAGGATTCACCTTTTGCCATTATCTGGGTCAAGAAGATCTGTGCGCCAGTAGTTCTGATGATGGGACTGTCAAAATCTGGGACTGTGAGAGAAAGATTATGCTTAAAGAGCACAGAGCTCACCAGAGTACCATAACTGCTTTGCACTGGTCCCCACTGGAGAAAGACCTGGTGGTTTCTGGAGACGAGAAAGGGGTCGTCGTTTGTTACTGGCACAATCGTAATGACACGCAAAGCTTCTTCCCGGAACCAAGGAATGTCTTTTGTTTGTCCTGTTCCCCTCACAATGAAAACTACATCGCTGTGGGGCAAGTATTCCGATCAGTTAATGCCATGGCACTGAGTCCAGTGTTTGGATCTCTGTACAAAGATGGGATGATTATTGTGATTGACATAAGTAAAAAGAATGAAGTCGTGCACCGTCTGAGAGGCCATGACGATGAGGTCCATGCCCTGGCTTGGTGTCCTGAGCCTGGGGAGGAGGCTTTGCACAGCCGTCCAGAGGAAGGGACAGAGGTAAACAATGGGCTGCTAGGGGGATGTGAGAGAGGCTGTTACCTGGCGTCAGGAAGCAAGGACCAGACTGTCCGCGTGTGGAGCACAGCAAAGGGGAAAGGGGTGATGACGCTGAAACTCCCATTCCTGAAGAGAAGAGGAGCTGGGGTCGACCCCGGGGTGAAGGAGAGGCTCTGGCTCACAGTAAATTGGCCTAAGGGTCATCCTACACACATCGTATCCAGCTGTTTTGGTGGGGAGCTGCTGTCGTGGGACCTTATGAAGAATGGCAAGCAGAAGTGGACTCTGCTGGGCTCTGCATCCGAGGGCCAGACTCACTCAAGGATTGTCTTTAACATGACCTCTGTGTGTGTCGAGGACAACAGGGAACTTCTCATCAGCATTTCAATGGACAGAGAAATTAAATGCTGGGACTTGTCTACCCTAGAGTGCTGCTGGACCCTGCCATCCCTCGGCGGATTTGTGTACGCGCTGACCTTCTCCCCCGTGGATACAGGTTCCCTGGCCGTGGGTGTTGGAGACAACATGATCCGAGTGTGGAGCACTCTGTCCATCCAGAACAAGCATGACACCAAGACCTTCTGGCAAGGAATCAAATCCAAAGTCACGGCGctGTCCTGGCACACACTGAAGGAAGGCTCTCTGGCATTTGGAACTGATGATGGCAAAGTTGGCATTTATGAAGCTTACTCTAACAAGCCCCCGCAAATATCCAGCACTTATCACCGAAAGACTGTGTACACAGTGGCCTGGGGACCCCCAATACCCCCCCTGACATTTGGAGGGGATGGAGACAAGCTGTCAGTCGCTCTGTATAGCTGTGCGGGAGAAGGAGTCATCTTTCAACACAACCCCTGGAAATTGGCAGGAGAAGCCAGTGACATTGATAAAGTTATTCGGGACACAAATGGCATTAAGCACAAATTATCACCACACACTGATCTCAGCTGGAAACCAGATGGCAAAATACTGGCTATTGGGAATGAAGATGGGTCAGTAGATGTGTTTCAAGCTCCAAATCTCAAGTTGCTGTGCACCATTCAGCAGCACCACAAGATCATCAATGTCATTTGCTGGCATCATGAGCACGGCAGCCAATCAGATCTCGGTTACCTGATAGCTTCCGGGTCAAGCAACGCAATTGTGTATGTGCACAACCTCAAGACTGTAATAGGCAATCCCAAGATCATTGTGATTGTCTGGGTACTGGAGACCAGCGGCATGGAGTCTCCACCAGAAAGCCCTGCCCTGATTACAGAACCCTACAGAAGCCTCGTGGGACACACGGCAAAAATCACCAGCCTGGCCTGGAGTCCTCATCATGACGGGAGGCTGGTGTCCGTCTGTTATGATGGGACGGCACAGGTGTGGGATGTGCCGCAGGAGGAAGCTGTGTGTAACTACAGGGGTCACAAAGGTCGTctgctgtgtgttcagtggtCTCCTGTAGACCCCGATGTGGTTTGGACGGGAGGCGATGATTTTACTGTACAAGAGTGGGCCGTGTCAAAGCAGGAGCACACCAAACCTCCAAAAGGAAAAAAAGGCATTGACCTTGAGAAGAAGAGATCATCCCAGCAGAAAGTGAAagccaagaagaagaagaaacagatGACAAGCAAAGCAGGCAGTAAGCCACAGGATGGCGAGGTTACCAACGGTGAAGGGGAGGGTCGACACTCTGTGGGACTGGAGGAGGGGCCTTCAGacctggaggaagaggaggagaaagagagagaggctggaccTCAGGCCACAATGAGCACTCCAATAGCGGAGATCCCAGTGAAGAAGAGGAAACCACGCTCATTGCTTCCTCTCAGCACAACTATGGATCACAGGCCTAAAGAGGAGCTCCAGCAAGATTGCCTGACTCTCGCTGCCATCAGACATTCAAAAGGCAAGCTGGTGTTGCCGAGTCAGTGTGTGCCAGGATCTGGGGACCACATTCAGCTGGGCCTTTTTGGTGACAGGAAAGCTCTCTACCAGATGTTTGAAGAAGAGGGAAAGAGCCACATCGAAGGAGGTCACTATGACTCTGCCATATACCTGTTACTGTGGAAAGGAGATATCACAGGAGCTCTGCAAATGGCAACTGAGAAGGGAGAGCTAACAGATCACTTAGTCTCTATTGCCCCCATGGCTGGCTATCAGGTGTGGTCGCGGACTGTGGAAGCCTTTGTGAAGCAGCTGTGTTTCCAGGAGCAGTTTGTCAAGGCAGCCTCTTACCTCCTCTCTATTCACAAGGTTTACGAGGCTGTTGAGCTTCTGAGGTCCCGCCAGCTGTACAGGGAAGCCATTGCATTGAGCAAGGCTAGACTGTGTCCTGAAGACCCTGTTTTGAAGGATCTCTATACCGCCTGGGCAGCTATCCTTGAGAAAGATGGCCATTACTCCACAGCGGCTAAATGTTATCTAGCAGCGGACTCTGCCTTTGATGCTGCCAAAGTGATCGCCAAGAAGGGAGATGTGGTGTCCTTAAGAGCAGCTGCAGAGCTGGCCCTGATTGTGGGTGAAAAGGACCTGTCACATTCCCTTTCCCTGCGATGTGCAAAAGAGCTGCTGTCTGTTCAGGATTGGCTTGCAGCCCAGGAAGTACTCCAGACACAGGAAAGCTTATTGGGTCACCAGCTATTGTTTTGCACTAATGAGTTGTTGTGGAAAAGCCTGGCAGACACAGCTCTCATAACCTGGAGCAGTACTTCAGCTCACAGCTGGATGGCAATCGCAGATGATGGGTTTTTGACCGCAGTGAGTGAAGTGTGGGTGAAGGAGTTTGGTATCTCCCCTATTGACAGTGAAAAATTAAAGCTACTCCACCAGCAGCTGAAATCCATGGAGAATCCTCCTGCCACTGTGAATGTACCCATCAAACAGCTCTTGTTCCACTTATCCGTTGACCTGACCCTCACCCTGTTGAGCGCTCTGGCAGGGTCCTGGGGAGAGATGCTGGAGGAGATGTTGTGCGCTCTGTCCCGCTGCAGAGACACTGGACACTTCATTCTCATGAAGGAGATCTGTGGGCTACTTTTTCCAAAGGGGACTGAATCCATCTCTAATTTCAAAGGGAAGCTAGACCTCACAGATGAAAAGAGCATCTCCGCTGCTCAAAGCCTTGAGGCCTTCATATGTTACCTGAAGTTGTATGAACTGTGGTGGACTAGCAGCAGTGAGCACACACCACTTTTGCCAGAGGAGACCATCGCTGCTTCTACTGCTGCTTCTCACAACGATGAGCCTAATGGACCCGACCACATCGGTGGTGCAGGAGCCGAGGATGAAGCACCCGACGATGAGTGTTCTGCTAAAGAGATCCCAGATGTGCTGGCAAGTGCTGCTGAACAAGAGAAACCAGAGCGCCTAGAAAAGGCCCAGTGTGTGTTGACCTGCAAGGCATGTCTGTCTGAACCACACGCCATGTTACAGGCGTGTGAGAGGGCCAAAGCCGAGGTGCAGCATAGACTGTCCAACATGGTATACCACCACCTGAAAAACCAAGGGGACCAACACAAAGACCATCCTGCTGCCACACAGACCGAAAACGACACCCCAGCCAGCGAACCTGCACTGAGtgAGGAACATGCATCTCTGCCTTCCTTGATTGCCCTAGTGTCTGAACATAATAAACAACTGGCTGAAATTCCTGAACACGTCAAGGAACACCCCTTCCCAGATGTAATGGAGTGCTGCCTTATCCTTCTTCATATGGCCCGAACCTCAGAAATCCCTGTTGACCTGCAGAAAGAGGCTTTAGCTCTTGTCCAGAAGTATGGAACTACACATGCACTCCGCAAAGCCTGTCAGAAATTCCTAACACCAGATTGTACTGGAGAAGTACAATGTACTGAGGACTAGTCGTATAATTTCAGAAATCAGAAACTACATAACATGGCAAGCCTCGGACAGCATCATCTGTCTGTTTTCTAAGTGTGTacataaatttaataaaatttcAATTCAT

Function

GO: NA

KEGG:

id description
K13133 GEMIN5; gem associated protein 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU134332 lncRNA downstream 29164 27887467 ~ 27887769 (-) True G107411
TU134330 lncRNA downstream 33353 27883048 ~ 27883580 (-) True G107409
TU134325 lncRNA downstream 71926 27790895 ~ 27845007 (-) False G107406
TU134327 lncRNA downstream 77468 27790895 ~ 27839465 (-) True G107406
TU134299 lncRNA downstream 301195 27613935 ~ 27615738 (-) True G107383
TU134413 lncRNA upstream 609924 28563067 ~ 28563577 (-) True G107471
TU134447 lncRNA upstream 713019 28666162 ~ 28666386 (-) True G107503
TU134553 lncRNA upstream 979694 28932837 ~ 28933182 (-) True G107597
TU134561 lncRNA upstream 981154 28934297 ~ 28967451 (-) True G107602
TU134600 lncRNA upstream 1249422 29202565 ~ 29203192 (-) True G107638
AMCG00011514 mRNA downstream 21622 27891757 ~ 27895311 (-) True AMCG00011514
AMCG00011509 mRNA downstream 203976 27712140 ~ 27712957 (-) True AMCG00011509
AMCG00011508 mRNA downstream 237787 27669795 ~ 27679146 (-) True AMCG00011508
AMCG00011507 mRNA downstream 277453 27620509 ~ 27639480 (-) True AMCG00011507
AMCG00011506 mRNA downstream 309945 27598114 ~ 27606988 (-) True AMCG00011506
AMCG00011517 mRNA upstream 71087 28024230 ~ 28025901 (-) True AMCG00011517
AMCG00011520 mRNA upstream 845087 28798230 ~ 28816286 (-) True AMCG00011520
AMCG00011521 mRNA upstream 870515 28823658 ~ 28851487 (-) True AMCG00011521
AMCG00011522 mRNA upstream 920990 28874133 ~ 28880153 (-) True AMCG00011522
AMCG00011524 mRNA upstream 1019082 28972225 ~ 29043557 (-) True AMCG00011524
TU134083 other downstream 1400426 26506943 ~ 26516507 (-) True AMCG00011485
TU133710 other downstream 2898601 25012205 ~ 25018332 (-) True AMCG00011445
TU133362 other downstream 4855967 23053316 ~ 23060966 (-) True AMCG00011409
TU132729 other downstream 8049031 19865614 ~ 19867902 (-) True AMCG00011356
TU132572 other downstream 8503918 19410368 ~ 19413015 (-) False G105970
TU134703 other upstream 1671941 29625084 ~ 29625387 (-) True G107713

Expression Profile