RNA id: AMCG00011518


Basic Information

Item Value
RNA id AMCG00011518
length 3072
RNA type mRNA
GC content 0.52
exon number 13
gene id AMCG00011518
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 28777033 ~ 28789389 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACAACTCTTGTTATTGGACTGAAAATCttgatttttttggtttggatAGAAATTGAAGCGAAGGAGGCCTGCGATTGGCTGAGAGCGGCTGGATTTCCTCAGTATGCCCAGTTATTTGAAGATTCCCAGTTCCCTGTTGACATAGACCTTGTGAAGAATGACCATGAATTTCTTGACAGGGATGCATTTGAGTCGCTTTGCAGGCgattaaacactttaaacaaatgtgtggaAATGAAGCTCGACATTAGCCAGCCAAGGAGAAGGAGTGACGAATCTGAAGATGAAGAGCCATGTGCCATTAGCACCAAATGGGCGTTCGAGAGGCACAGTAGGAGATGGTCACGTCTGGAGGGACTTGAGATCCCTCTAGCAGGAGAGCAATTCAACATCGGGGTTCCCGATAGCCCCTGCCTGAAAAAAGCAGCGAGCCAAGAAACATCCTTTTCCAATGCGGTGGAGAAGCACGACGCCTACTCTGTGCACAGCTCCAGCAGCGCAGAGAGTGACGGCACGGGCCTCCCCAAGACCTCTGAGGATATGGAGTCCAGCCGGAGCTCCTCCAGATGTTCCTCCAGCAAGGTGGCATCTCCTGACACCTCCTTCAGCGGGCCGCCGTCCCCCAATGAAATCCCGAGCTTGGGCAGTGAGGAGAAGCTCTTGGAGAAGCCTCCCAGGAAAAAGGGCAAGAGCCTGCTGTGGAAAATGGAGAAGCTGAGGATGCGAGGCTCCACGCTGAAGAGACCCCCCACTGGGAAAGCCAAGCCGCTCATCAGTGGGCCCATCATGCAGGAAGGCTTCGATGAAGACAAACTCAAGAGACTCAACTGTGTGGACATCGCTGAGCTCCAAGATTCCAAGAGCgatctctccttctccctgcGCTCCTACAGCAGTAGTAGTCCATCGGAGTGTAGCAGCACCATGAGCACCCCAAGTCCAGTCACCCGTGTGCGCAGCCACAGCAGAAAAGCCAGGGTGGCCTACATCGAGCGTGTCACCAACCCGGCCGACATCAACGAACAGGACTATAGAAATGAGAGGAACCGCCAGGAGAACCTCATCTTCCGTGTCCCACAAGGCCACAAACCTGGGACGTTCCCTAAAGCCCTCACCAATGATGTCCTGTCTCCCATGGATAACACCTCCGTTAACTGGAGAACCGGCAGCTTCCATGGGTGCAGAGAAAGAAGGTCAAGGAGTAACCCTTCCAAAGACCAAAATTCTCCCTGCAGTCCCCTAGCTACCTACGACAACCGGATCAGCATTTACGATAACGTTCATGGGATTCAGGCCCACCTCCAGAATGCAGGGCAGCCATCAGAGATGGGAGATGATGATGTTTTCACAGAGCTGGAAAGCATCATGGAGCCCATGAATGGACTTCAGCAGCTGTTAAGTAAGTGGACAGAGAAGCTGTCAGATGATGGGGACTCTGATTTTACCAATGACTCCACCTCCCCCTGCCCGTCCTCTCCAAATGAGATCCACCTCGAAATAAAGAAGCACGAAGAAGCCGACCCACTGATTACAGAAGCAGATGTTGACAGTTCTGACAAAATCACCAACAGCGAGGAATCGACTGAAACCCACTACATGACAGATTCTGGAGTTGGTTTGTCTCTGTCACATCACAGCAGGCAGTCCAGGTTACTCTGGTCCAGTGAACAGAACTTACATACAGAATTGTCCTGTCTAGGGATTGAAACTCAGTCAGCAGCTCAACTCAATCTGCTGCAGAAACTGTCTTTGCTTAAACTCACAGCTTTGATGGATAAATTCTCCCCCTCCAGCAAGCAGGGCTGGAACTGTGCCTTGATCAGATTAGGCGTTTTACCCTGGGGTTGTCATTGTTGCATCCAGGTGGGCTTGTTCCGAAAATCCGGAGTGAAGTCACGCATTCAGGCCCTGCGGGAGATGAATGAGATGCAGCCAGACTCTGTGAGCTACGAGGGGCAGTCCGCCTATGATGTGGCCGATATGCTTAAGCAGTATTTCAGGGATCTTCCAGAGCCAATATTCTCCAGCAAGCTGTGCGAGTCTTTCCTCCATATCTACCAATATTTTCCAAAGGACCAGCAGTTTGCCGCGGTCCAGGCTGCCATCCTTCTGTTGCCAGACGAAAACAGGGAAGCATTGCAGGTCCTGCTCTGTCTCCTCCGGGACGTAGTGGATTGTGTCAAAGAAAACCAGATGACTCCCACCAACCTGGCTGTCTGCCTGGCCCCCTCTCTGTTCCACCTCAACACCCTGAAACGAGACAGCAGCACTCCCAGGTCCAGTCACAGGAAGTACAGCCTGGGTAAGCCCGACCAGAAAGACCTGAGTGAGAACCTGGCAGCAACACAAGGGCTGGCTCACATGGTGGCTGAATCCTCTCACCTGTTTCAGGTGCCACAGTACTGGGTATTCAGGCCTCACAACCGAACGCAGGACAGCAGTGAGAAGGACCAGGACCGACGCGCTCAGCTGGACATCTCTGTGCAGAACTTGCTGAAGGAAGCCAGGGACAAGTTTAAAGCCTGGGTCACCTGCTCTGGTCTTGACCAAGTAGACCTTGCTTTTAAAAAGCCAGAAGATGAGCACACATTGCGCCTGTGGAAAGTGTCGGTGGAAGTGGAGGCCACACAGAGCAACGTTCTCCACCGCATACTGAGAGAACAAAAGCTTTGGGAGAAGGACCTCCAGAAGTCGAAGGTCGTCGAGACCTTGGATAAAGATGCCGAGATCTACCACTATGTCATTCGCAGCCTGAGCCAGCAACCTCCGCGGGAATACGTGCTGCTGAGGACTTGGCAGAGCGATCCTCAGACAGGCACTTTGGTTGTGGCAGCCACTTCCACAGATCACCGGGACGTGCCACAGAAAGGCATCAGGGCCGAGGTGCTCACCTGCCAGTACTTAATCGAAGCCATAGGACTCAGAAAAAGCAGACTGACACACGTCTGTAGAATAGACTGCAGAGGCCGCACGCCAGAGTGGTACAACAAAATGTCTGGGCATATGCTAGCTGCTGACCTAATGAGAATAAGAGACTCTTTCAAACCTGAAATGAaagagacaaaaatataa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU134459 lncRNA upstream 62544 28714123 ~ 28714489 (+) True G107513
TU134446 lncRNA upstream 110647 28666166 ~ 28666386 (+) True G107502
TU134387 lncRNA upstream 488642 28288150 ~ 28288391 (+) True G107450
TU134329 lncRNA upstream 893637 27883095 ~ 27883396 (+) True G107408
TU134321 lncRNA upstream 902895 27790866 ~ 27874138 (+) True G107402
TU134477 lncRNA downstream 6498 28795887 ~ 28863757 (+) True G107530
TU134502 lncRNA downstream 81181 28870570 ~ 28876355 (+) False AMCG00011519
TU134578 lncRNA downstream 291842 29081231 ~ 29161742 (+) True G107618
TU134632 lncRNA downstream 532575 29321964 ~ 29323626 (+) True G107661
TU134644 lncRNA downstream 695483 29484872 ~ 29490870 (+) True G107672
AMCG00011513 mRNA upstream 202692 28571622 ~ 28574341 (+) True AMCG00011513
AMCG00011516 mRNA upstream 220344 28548503 ~ 28556689 (+) True AMCG00011516
AMCG00011512 mRNA upstream 818110 27952299 ~ 27958923 (+) True AMCG00011512
AMCG00011511 mRNA upstream 861034 27908392 ~ 27915999 (+) True AMCG00011511
AMCG00011510 mRNA upstream 870182 27895516 ~ 27906851 (+) True AMCG00011510
AMCG00011519 mRNA downstream 79753 28869142 ~ 28875839 (+) True AMCG00011519
AMCG00011523 mRNA downstream 161921 28951310 ~ 28967738 (+) True AMCG00011523
AMCG00011525 mRNA downstream 329453 29118842 ~ 29139529 (+) True AMCG00011525
AMCG00011526 mRNA downstream 432962 29222351 ~ 29274495 (+) True AMCG00011526
AMCG00011527 mRNA downstream 490000 29279389 ~ 29321857 (+) True AMCG00011527
TU134311 other upstream 1049166 27712206 ~ 27727867 (+) True G107394
TU134126 other upstream 1946978 26818052 ~ 26830055 (+) False AMCG00011488
TU134100 other upstream 2005819 26770438 ~ 26771214 (+) True G107202
TU133992 other upstream 2416258 26356167 ~ 26360775 (+) True AMCG00011476
TU133489 other upstream 5024031 23748674 ~ 23753002 (+) True G106711
TU134734 other downstream 908212 29697601 ~ 29699419 (+) True G107741
TU134787 other downstream 1068581 29857970 ~ 29875476 (+) True G107784
TU134867 other downstream 1382399 30171788 ~ 30212090 (+) True G107858
TU135008 other downstream 2194590 30983979 ~ 31173789 (+) True AMCG00011551

Expression Profile