RNA id: AMCG00011526


Basic Information

Item Value
RNA id AMCG00011526
length 7333
RNA type mRNA
GC content 0.45
exon number 25
gene id AMCG00011526
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 29222351 ~ 29274495 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ctactactactactgttggATGAACTCCAGCAAGTCCGGCTTCCGTGTGTATTAATGTCCTATATCAACAGATGAGCTTAAAATAACCAAACCACAGGATCACACCCTGCTCGGCAATAGTCGCCAGTTTGCTACTGAAACTAGCTACGCATACGGATGCTAATTTCACGCGTTggattgttaatttatttatgtgtggtGATTGTCTACAGTGAAGTCTAGGTTGTTGATACATGTTTATTATGTTGATGGTATGCCTCGGAAAAAGCGAATGCGTTCGGAAGAATCTGACCAAGGTACATGCATACCCAGGAAAAAGCGTCTGGCTGGAAATAAGGGGCAAACCTTTGTTGTGTCTGACAACGAAAATCAGGAGCAGAATGAAGTGCCACAGTCAAGAGAAGGACGTTTGCGAAGCAGAGACAGGAATAAAGAGCAAGAGATGACAGAGGAAGAAATGATGGACCTGGCATTGAAGATAAGTGAATCTGAAGCCAGTAAGGTACTTTAccaggaggaacaggaggaggaggaagctgTGAAGTTGGCAATCGCACAGAGTCTGTCTGAGAACAGCACACATGATAAGAAGAACCAGCTTGGTTTGTTGAATGAGCAGGAAGGCCCAAAAGCAGGGAGCGAAGGGAAGGAACCTTTCAGCCATGAGAGGCACCCCTGTGACATCCAGTCAGATACAGAGTCTCTGTCGGGAAAGTATGGCTCAGAGCGCAGTCCTGTCCTCATACTGGAGAAACTGAGCCAGGATGTTTTGGGCACCTGCCAGGAGTCAGGTTTTGTGGTGTTCTCCCAGAACAGTCCTCTCACGTTGACGCCAAACAGGGGATCTGTGCCCTCTTCCAGTCAGAACTCTCCCCTCATGGAGAGCCCCACCTTTCCTCGGAGGTCCAGTGAAGTCCAGGCCTTGACCCAGAGGATGACGTCCCAGATATCCGATGAGGCAGACAGCAGTGGGGTCAGTGACGACGACAGGCTGGCAGGGAAGATGCCCGGGACTGACAGGAAGAGGAGGCAGAGCAGCCCACCTGTCGGAGGGAACAACAGAGCACCTCGGCACAGTTCTGAGAAGAAAAATGCTGATGAACCACTGGCAAAAGACCACATTGAGCAGCGGTGTCAGACCTGGGGTTTGAAGAAGAATGAAGAATTACATAGTCAGATGACATtgcactggacagaggaagaggaggaggaagatgtaAAGAAGGAAAATCAAGAAAGCTGTAAAGCAGATCATACTCCTTTCCCCCAGAAGAACGCTTCCTGGAATGCAGCCTCTGAGAAGGACTGCTTCCCAGATTCAGAGTCTCTGCCCAGGTATCCCTCCAGCTGCTTTGCTCCCTCATCGGCACCTGTCTCCCATGCAGACAAGGTGAGCCGAGACCTGGAGGGCAGCTGCCAGCCATCAAGTTCTGGGATGTGTTCACAACACCCGGCGCCCTCGGAGAGCTCACAGCCACGCCCCAGTGGCAGCCCCCCACTTCCCAAGAGTCCTGTCTTCTCCAAGAGAGGCCTCAGTGGGAGAGGAAGGAACCTGGAGAGCATGAGTGAACGGGGCCGCCTGAGGAGAAAGTTCACCTTCCGCAAACTGGATGTGGGAGAAGTGACGACAGCCGATGAGGACGATTGCTTTCTGCAGAAACAATCCTGCAGCTCCAGGCCGGCATCCAAAGCCAGCCACCCCTCCACGCCACCCACTCCACATAGAGAGACCTCCCAGGGGCAGCCGGGCCAGGCTCAACCAAGCCAGGGGAAGGGCGTTGTTCTGTATTATTGGGGCGTTCCCTTCTGTCCCAAAGGCCAGAACCCAGATGACTACACTCAGGTGATCCTCTCTCAGCTTGAGGTATATGAGAAGAGCCTGAAGGAGGCTCAGAGGGGGCTGCTACGCAAGGCTGAATGGGGAGACCCAGTGCTCCCTGCCCCCTCTGATGAAACTGCGGGCAGAACAACCAGGCTGTTACGATTGAGAAAGAGCGAGAGTCAGAGCCAGGCATCCCAAGATCCAGACAGAGAGGGGGGTAggggggaagaggaggaggaggaggaggaagaggaggagaaggagaaggagaaggaagcAGAAGCATTAGGACACTGGGAGGATAGGAGAGGTGTGCAGCAGGACCGGCAGGACAGTGATGGAGAGAAGGGAACTTTGCAGAGAGAGGAGCAGGAGGAGTCTCCACTGCTGTTCACCCGAGAAGAGCCCAAGAGGAAACGATTATCTCTGAGGAGACGTCTGAGGATGGACAGCCCAGGTGAGACTGAAACATTGCAAAAAGAGGAGCTGGAGGTGGAAGTGTGTCCAGagacCCAAATGAGTGATGATGCCACCCAGCTGCTTAATTTGAACAGCCCCGCAAGGACTGAGGCCCCGCCAGacgtggtggtggtggaggatGACGCTGTGGCTGGTGATGAGGAGGGGCCTGACAGTGGGCCCTCTGCCCCCAGGCAGCAAGTCCGTGATAGTGTGCAGTGCCCTCTCTGCATGAAGAGTTTCCCCAGGCTGCAAGTGGAGGTTCATGCCGCCTACTGTGATGGCAACCTAGGGGAAGAGGATGTGTTGGAGGAGGCCAACATGCAAGCCTCTGCATTAAGACGGAGTAGCAGAAGAGCAGAAATATCTGAAAATCAGCCCAGTTCCTTTGCTTCTGCCAAATTGACACAGCAGGAAAAGTGCTTCATCTGCAAAGGCTTTTTCTCTATTAAAGATTATAAGAGGCATATTGAAATCTGCATCAACCAGGACTCAAACAGGCCCAGTGAGggaaaatacttatttttgaCTGCTTTGGAACAATTGGAAAACAAGACATTAGGAAATGCAGAAGCTGAATCTTCCCAATCATCGCTCAGGCACAGAGTACACAGATAGAGAGCGACACCATGTGGGAAAAGTTGAGGAGTGGCTGCAGCCCTTCAGACTGCCCCGAGAAAAGCTCTGTGAAGTGTCCAGTAGGCTCCTGAAAGATATGGAGAGGGGCCTGGACAAGCATACCCACCACAGAGCACCCGTCAAAATGCTGCCCACCTTCGTGAGGTCTACTCCGGATGGCACAGAGTCAGGAGACTTCCTTGCCCTGGATTTAGGAGGAACCAACTTCAGAGTTCTCCATGTACGTGTGGAGGAAGAGGTAAAGAAAGTCCTGAAGATGGACAGTCAGATCTGCCCCATTGCCCCAGAGATCATGCTAGGAACTGGCACACAGCTATTTGACCACATCGCGGCCTGCCTGGCAGAGTTCCTAGAGGCTCTGGGAATCAAAGACCAGAAGTTGCCCTTGGGCTTCACCTTTTCCTTCCCCTGTGAACAGAAGGAAATTGACaagAGTATACTGATTTGCTGGACCAAAGGCTTCAAGTGCTCAGGGGTGGAGGGGCAGGATGTGGCAAAACTACTCCGAGATGCCATCCACAGGAGAGGGGATTATGACATTCAGTCAGTGGCCATGGTCAATGACACAGTGGGGACCATGATGAGTTGTGGCTACAGGGACCAGAGCTGTGAGATTGGCCTGATAATTGGGACTGGGACAAATGCTTGCTACATGGAGGAAATGAAGAACGTGAAAAGAGTGGAGGGGGAGGACGGGCGCATGTGCATCAATACTGAGTGGGGTGGCTTCGGAGACGATGGCTCTCTGAGAGACATTCAGACCGAGTTTGACATGGAAGTGGATCGCAGCTCTCTCAATCCAGGCCAACATGTGTTTGAGAAAATGATCAGTGGTATGTACCTGGGGGAGGTTGCCCGTTTGGTCCTGGTCAAACTGGCCAAGGAGAAGCTGCTATTTGATGGGGAGACATCAGAGGCCCTACTTTCGCTGGGTAAATTTGAAACCCGACACATCTCTGAAATTGAGGAGGATACAAATGGCCTGACCAGAGCTAAGGAGATACTGACAGAGCTGGGGCTGCCAGTCAGTGAAGAGGATTGTGGGATTGTGCGCCATGTATGCAGTGCTGTGTCCACACGCTCTGCCCAGCTTTGCGGTGCTGCCCTGGCAACCATCGCAAACCGTATCCGTACCAACCGTGGACTGGACCATCTGCGTACCACCGTGGGGGTGGACGGCACTGTCTACAAGAAGCATCCCAAGTTCAGCCAGCATCTGCAGGAAGCAGTGCGGTCTTTGGCTCCCAAGTGTGAAATCAGCTTCCTGTTATCAGAGGATGGTAGCGGGAAGGGAGCTGCCATGGTGACCGCGGTGGCCCAGCGACTGTCAAGTCAGTCCCGACTACTGGAGGACAGCGAGGAAGATGAGGAGAAGAGCTAACAAACTGTTCCCTCTCCCATAGGCAGGCTAGGCAGGAGCCAGTGCTTCACACTCTAGCAATGCACAGTTTGCTGTCcatcaaaaaaactaaaaaacaaaacaaaagctgtatACCTCCACCTCACACATTAGACCTGCCTGGGCAGAAAGGTGGATAGCATGTTTAGAAACTGgatctggaaaaaaacacaacttaatACTAAAACCCTCCCACCCTGATCCTATTTCCATTTTATAAAGTAATGTTTGGGTCCTCAGGTTATCAAAACATTGGATCACAGCCACTGAGCTTtatctttaaaacaacaaaccattgatgttgttttaaagataaagctgacttttttcccccattactattaaaacaatactttgcCTTTTTTCCACCCAGAATATATATTATCTTGCATAGATCATACTGTTCAGTGAATGTGCTTTTTTCTTCAAGGATATGCCTTCTGTAATTGAAGAGAGTGCTTTGTATAATAATCTGAGCACACTAATCAAAAATGCCATTATGCTACTGGACTTTGGAGTGAAGATATTGTTTATGGTTCCCATTTTTcttgttcatatatataatcAGGTTACCTGCCTTTGTTTCCCTAAAGTGCATTGTCCCACAATTTATGATATTCAGTGCTCAGGCATTTATTGAAAATctgaacattttcagtttcactgtGAGTGTAACGTGAATGGAGTGAAAAACATCATTTGGCAGCTGGTTTCACCTCCTACATGGTTTAATCTCGCTACTTTGGCACTTTTTCCttcacaaatcaaacaaactgtAACCAGACTATTGCAAAGATCCTTACAATGACCTACAAGCAACGACAAAAAaggaactgaaatgttttgtttttaatagaacTCATTGGGTGCTCTTCATTATAATCATTTTGCgctttaacatttttgaaatctgataaaaaaaaatgtaagaaagaaATTTGTATTGGAAAAGGAGTGTATAAGATTGGACAGGTATGAATgtcagacaaatatatatattggactTGCATTAATGTATGCAATTATATGGCAACGTTTACCATTATATTGCAACAGGTCGGAAAATAATCAGGCCAAGATCCGTTATTAtttctgtgtatatgtatatgtatcttATAGTTGAACTGGTTTTATTCTGTGATTcctatagtttaataaatacggtttattaaactatacttatttatgaaacttaataaatcactgcataacattgtttaaaaagaatGACGAATGGTTTGAATGCGGTACTTTGAACTGTATTGTAAGGACATATTATGCAATCTACATGCTGTGAAATGCTTGTCAGTGAATTGACATCCTGAtattgctgatttaaaaaacaatgcagtaaTTAGATTTGGTTACAAAAGCAATTACACCCCAATCCAGTTTCCttggcattttttaaataacagagtAATTGCTATTCATCTGCACTCATTATTTCATTGCAGTGAGCCAAACTATAATGGGTTTTATAGGTTGCTTGGAaaacatgttaataataattttttataCCTTATACTGcctaataatttttttaatgatgcaaATTTCAGTTTGCAAAGAGAATACTTGTCTGACTGTCCAAAGCActatacatgtatttgaatCAATATTCCAAAGGCAAATGTCCTCAATTTGCATAGAAGAAAAAATCCAGTCTTAAAACGTCCAGTAGAACATTGTAGAATAAGTGCTGTCCCAAGAGATATAATGGTACATTGAAGGTATCGAGTAAgttaattgtatattatattttattgatcaaTAGCTTTAGAGATATTTATAACATGAGTTGCAAAATgggtaaaataagaaaaggccTATTTATCTAactagggctgggattaaatcaaaacccacACGCTAATAGGAAACTAGAGAACTGTACTGAGTtgctttcttctaatcataaatgtaaccactataatgtacaggtttgtagtttgctattagtgggtggttcaaagttttgatttaatcccgcCCTAGGTCActtaaatatcaatataattacatataaaatactgtagATTTTTACAGGTGCAGACCAACTTCAACTTAACGATTTGCTTAGAAGATGCAGCTTTACAACATGTTTTATGCAGTTTATTTGTGTTAGATATGAGGGTGGGTGAATTGTCAAAATATAGGGGTACAAGGGAaggttttttaaatgctgaaattCAGTTTTAGATATTACAGTTGTTTTTACATGGTACTGGTTGTAGGTGTTTgtgttatattaaaacattatttatatttggatCTGACTCGGGTCTATAGTATACAGGGTCTAAAATCTCAAGAATTTTATGCTAATACATCCAAATGTTTGTTACTTCTTTTGGTTTAATTTGCCGCTTACTGAATAAGAAAGTGTAGCTGTAGTACAAACAGCgtacaaataaacattacatttaaggaAAACAGTATTTCACTGAGTATTTCAATGCTTGAGGTTgagttaaatatgaattaaaatccAAAGCTTACTTTAGTTTTGCCTTGGCACAGTACAAATTGCAGTCTTTACAGTGAAGTACAGTATGCACAGTCATATTGGTACCATGTTTTGAAATCTATCTTTCCACTGTGTTGCTTGAAttttaatgctttgaaaacagTAATGACTAACTGGttgtcatttgtgtgtgtgctacaCTGGAATGTGCAATAAAAGACACCTCTAAATAAAGCAAGTTggatttattatttgcatttgaattggAGAACACTTATGAAATTCAGAGTCCATGTGTTTTGAAAGGATGAAGCCCAATATGTTTGCTGATACACTGTCAACCAATGTGAAATGACTTGTGGGATCAAGAAAATTTTGATAGCCTATAAATCGTACTTACTGTCAGTGTAAGATCACATTGTATACTATAACAGAAATGTGACAGACTTGCATACAAAACAATGTGAATCATATACCCACAtacagtcacctccaaaattattggcacccttgataaagCTGAGCAAAAggggctgtataaaat

Function

GO:

id name namespace
GO:0046835 carbohydrate phosphorylation biological_process
GO:0006096 glycolytic process biological_process
GO:0005524 ATP binding molecular_function
GO:0004396 hexokinase activity molecular_function

KEGG:

id description
K00844 HK; hexokinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU134578 lncRNA upstream 60609 29081231 ~ 29161742 (+) True G107618
TU134502 lncRNA upstream 345996 28870570 ~ 28876355 (+) False AMCG00011519
TU134477 lncRNA upstream 358594 28795887 ~ 28863757 (+) True G107530
TU134459 lncRNA upstream 507862 28714123 ~ 28714489 (+) True G107513
TU134446 lncRNA upstream 555965 28666166 ~ 28666386 (+) True G107502
TU134632 lncRNA downstream 47469 29321964 ~ 29323626 (+) True G107661
TU134644 lncRNA downstream 210377 29484872 ~ 29490870 (+) True G107672
TU134699 lncRNA downstream 323506 29598001 ~ 29598243 (+) True G107709
TU134702 lncRNA downstream 350595 29625090 ~ 29625387 (+) True G107712
TU134704 lncRNA downstream 351246 29625741 ~ 29626058 (+) True G107714
AMCG00011525 mRNA upstream 82822 29118842 ~ 29139529 (+) True AMCG00011525
AMCG00011523 mRNA upstream 254613 28951310 ~ 28967738 (+) True AMCG00011523
AMCG00011519 mRNA upstream 346512 28869142 ~ 28875839 (+) True AMCG00011519
AMCG00011518 mRNA upstream 432962 28777033 ~ 28789389 (+) True AMCG00011518
AMCG00011513 mRNA upstream 648010 28571622 ~ 28574341 (+) True AMCG00011513
AMCG00011527 mRNA downstream 4894 29279389 ~ 29321857 (+) True AMCG00011527
AMCG00011529 mRNA downstream 97384 29371879 ~ 29417263 (+) True AMCG00011529
AMCG00011530 mRNA downstream 143428 29417923 ~ 29436718 (+) True AMCG00011530
AMCG00011533 mRNA downstream 369673 29644168 ~ 29651012 (+) True AMCG00011533
AMCG00011538 mRNA downstream 728705 30003200 ~ 30057500 (+) True AMCG00011538
TU134311 other upstream 1494484 27712206 ~ 27727867 (+) True G107394
TU134126 other upstream 2392296 26818052 ~ 26830055 (+) False AMCG00011488
TU134100 other upstream 2451137 26770438 ~ 26771214 (+) True G107202
TU133992 other upstream 2861576 26356167 ~ 26360775 (+) True AMCG00011476
TU133489 other upstream 5469349 23748674 ~ 23753002 (+) True G106711
TU134734 other downstream 423106 29697601 ~ 29699419 (+) True G107741
TU134787 other downstream 583475 29857970 ~ 29875476 (+) True G107784
TU134867 other downstream 897293 30171788 ~ 30212090 (+) True G107858
TU135008 other downstream 1709484 30983979 ~ 31173789 (+) True AMCG00011551

Expression Profile