RNA id: AMCG00011534


Basic Information

Item Value
RNA id AMCG00011534
length 3765
RNA type mRNA
GC content 0.60
exon number 25
gene id AMCG00011534
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 29686185 ~ 29739369 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTTCCATATGATGGACTTCACTGTGGTGGAAGGGTGGCTCCTCTACCACAGAGACTATAGAGACCTAGGGCAGGTGATCTCGGCGCTGGGCCCTCTGCAGACTCCCCTGGGCTCCTGGGCTCCTCTGCGGGGACTGGCAGATGTCCCCTCCTCGTCTTCTCTCAGGGCCCCTGACTCCAGGCTCGGTTCTAGTTTGCTAGGGGCACATCAAGAGGAGAGAGTGTCCTTGTCTCTGCCAGGGTTTGAGGATGAGGATGTGGGACTCTCAGAAGCAGAGAGCTCATGTGGGACGGCTCACCTGCTGCACAACCTGCACCTGGAACTGGACTCCCTGGAAGGAGGACTGCAGTATGAGCGCATTTTTGGGAGCCTGCAGTGTTTGTTTACTGAGAGTGACTGTGTACTGACAGGAAGCGCCGTGTGCAGGgatctgtgctgtgctgtgctgtgctgtgctgtgctgtgctgtgctgtgctgtgctgtgctgtgctgtgccgtgccgtgccgtgccgtgccgtacCGTACCGAGGCAGCAGAGACTGCAGTGAGGACAGCCTGAGCCGGGTGGCCtgttcccccaccccccagctcTCCCAGCCTGCCAGCCACACATCGCCCCCTCCTGAGCTGGGGGAGAgccagggagaggggaggggggctggAAGCGAGGGTTGGGGAGTAGAGACAGGAGTGGGGAGTGAGGATGAGGAGAAGGACAAGGTGGAGAGAGGGGAAGTGAGTGAGGTGGAAGTGAAGATTGGGGAAGGGGGTGAAGGAAAGGAGGAAGAGGTggaagagagaggggcagggagtgagggagaggaggaggtggacCCTAGGAAAGTGAGcaagggagaggaggaggagaaagaggaggaggtggtgttGGGGGAGAGAGGCACAGTGGGTgggggagagcaggaggaggaggtagagggggagagaggggaagagagtcaggtggaggaggaggtggtgagTGCCAGAGAATATTCAAGGAgcaagggagagggggaggaggtaGAAGCAAGGGAGAGATTCTGCAGGACAGCCTTGTCCCCTCTCTCTATGGCAatgagaagagagggagagcaggaggaggTTCAGGGAGAGGGGGGTGACCCTACTTCCCCTTGCTGGGACTGTCAGCCCAGGAGTGGAGGGTGTCCAGTCCAGGCCcccacagcaacagcagctgcagCCATAGCCACTGGGGCTCTTTGTTCAGAGTTTGTGGCAGCTGGGCAGGAAGAAGGGAGCCttgaggagaaggaggagaggaagagcaCAGAGGCATCAGAAAGGCAAATAAAGGAGTCTGGGAGAGGTGAGTCCAGGCCCAGGAGCCCGGGCAGTGAGGCCCTGAGTGGCTCGGAGCGGAGGCCGGAGGTGGAGGGAGGTAGTGGGAGCCTGGGGAGGAGGCCTGAAACAGAAAGAGGCAGGGCAGAGCCCACTGGCAAAGGAGAGAGCGGCCCCATCTGTGAGAGTGGGCCGTGGCCGGGGGGGTGCGCCGGGCCCAGGCCCTATCTGAAGGATCTGCAGCAAGAGACTGAGAGGCAGCTAGAGGAGGAGCGAGCCAGGGCCCTGCAGGAGAGGCAGGAGAGGCTGAGGGACCTAGCTGAGGAGctgaggagagaggagaagaaggaggaacAGAGGCTGAGGCAGGAGAACACTGATAGGATCCGGGCCTTGAGGGAGAGGCtgcagggggagagggaggccCAAGAGGCCAGGCTGAGGCAGGAGCACCAAGAGAGGCTGGAGGCCATCACTCTTTCCATTCAAACTGAGAGGAATGCCCGGGAACACCACctaagCCTGAAGCTGGAGGTGGAGGACGAGCTgagacaggagagacagaggcTGGAGGCCCACAGAGAAGCAGAGCTAGAGGATCTGAGGAGAGAGGGGAGGAGCAACCAGCGCCAGGCCAAGCTGGGGAGGAGCCAACAGACTGGACAGCAGCTCACTGCCTATCAGAGAGAGCTGGGTGAGGTGCTGAGGGAGGTACGGGAGGAAGTGCAGAAGGAGCATGACAGGAAGCTGGAGCAGCTGAGAGAGGATCACCTACACGCCCTGGAGAGCATCAGGGAGAGTCTCCTGGAGGAGGAGCAAAGGCAGAGAGACCGACTGCTAAGCTCCCtgcaggaggagaaggagagggtaCAGGCAGGCCATCAGTCCCAGTTGAAGGGGCTCCGCACGCAGCTGGACGCGCAACTGAATGAGCTGCGGCGCACTCACAGCCACAAGGAGAGTAAAATACAGGAGCTGGCAGAGGAGCTGGAACGCAGGGCCAAGGAGATGAAAGCCAGGAATGTAGCTCTGCAGACTCAGGAGGAAGACctgagaaggaggagagagcagctggaggaggaagaggagcagagGGAGAAAGGCCTGGATGAGGCAGACAGAGTGCAAGTGGCCAGAGACCACCTGATGCAGGACAGAGACAGGCTGATGGAAGAAATGGAGGAACTGACAGAGGAGAGCGAGAGACTGTGGGATGAGAGGAACAGGCTGAGGGAGGAAAGGGAGAAACTGAAGAAGGAGCGAGACGGGCTGCAGGAACAAGTGACTCAGTTGCAGGAGTGCTGTGACAAGCTGAGCAGGAGAGCCAGTGATGTGGAGCGCCTCCCCAGCCACAAGGAACCCCTTGCTGGCCAAGAGGACACTCTGCAGCTGGAGGACTTGGAGACCTCCCCTCTGCACCCCTCTCAGTCTGGAACAGAGGAGGCTGAGCAGCTGCTTGATCTCCCCCAGCTCAATGGGGGCCAGAGGGGCGGCCTGGGTCAGGTAGCTGAGCGGCTTCTGATGGGTGCTGGGCCTGGCGCTCGTGGGGCGGGTGGGAGGCTGAGTGATGGGGGGCTGGCTGGTGCTGCGGCGGCATGGCTGTCGTTCTCCTGCTGCAGGGCGCTCATCTCACTCCTCAGCTCCGTGATGGCTGCCCTGCTCTCTCTTGAGCTGAGTCACCTTGTCTCTGAGCTGCTGGTGAAGAAGATGAGGTTGCTTCTCATCCTCTTGTCTCCTGCCCGAGTGAAGTCTGTGTGCAGACACTCAGGGTTGCTCTTCAGCACCCCCAGTCTGTGCTCCTTCCTGGTCTTTGCGTTGCTGCCTCTGCAGCTGTCTGATGAAGATGCAGTGAAAGGGATGGCGGACAAGAAGGTGGTCACCTTTGACTTCAGCGATTCTGACATCAGCAGTATCAACGTTCCCAAAACAGCAGgTCTCAGAACCCCAGGCCCGCTCCCAGCAGTCCCAGCTAAAGTGCACCACCTGACTGATTCACTGCAGCAGATCTCCATGCAGCTCAACACTGTGCTGGAGGTCCTGGGATCTCAGCAGTCCCAGCTAATTAAAGTCCCTGCTCAGCGGCAGGCTCCCATCACCCCCTTCTCCGTCTACACCCCCCTGTCCATGCCCCTGTCCCGTGGCCACCACACCCCCTCACTGACCCCCTGGGCCTGGAGACCCCACCCCAGCTCCTGTGCCCTGGAGGACACGCTGGGGAGCCACCTGGGATACAACTCTGCCAGagAGCAGGTGTGCAGCCTGCGGTCAGGCCAGACCAGCACCGTAGAGCTGGACGGCCAGCGACTCCAGGGCCTTATCGACGGCAACAAGAGGTGGCTGGAGAGACGCAGGAAAGACCCCAAGGTACCACTGTTCACAAACACTTGGAACCCCCCCTCCATGAGTGGTTTGGTCCAGTTGGGCCTGGATGACAACAACCAGATAAAGGTCTACCACTACTGA

Function

GO: NA

KEGG:

id description
K16462 CEP164; centrosomal protein CEP164

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU134722 lncRNA downstream 5159 29680810 ~ 29681026 (-) True G107732
TU134718 lncRNA downstream 13072 29671571 ~ 29673113 (-) True G107728
TU134701 lncRNA downstream 68447 29617521 ~ 29617738 (-) True G107711
TU134695 lncRNA downstream 128873 29556808 ~ 29557312 (-) True G107705
TU134675 lncRNA downstream 197705 29402035 ~ 29488480 (-) True G107695
TU134766 lncRNA upstream 47665 29787034 ~ 29787355 (-) True G107765
TU134771 lncRNA upstream 57286 29796655 ~ 29800616 (-) True G107770
TU134772 lncRNA upstream 57286 29796655 ~ 29800616 (-) False G107770
TU134773 lncRNA upstream 57286 29796655 ~ 29800616 (-) False G107770
TU134790 lncRNA upstream 92552 29831921 ~ 29875263 (-) True G107786
AMCG00011532 mRNA downstream 172177 29491908 ~ 29514008 (-) True AMCG00011532
AMCG00011531 mRNA downstream 224975 29444603 ~ 29461210 (-) True AMCG00011531
AMCG00011528 mRNA downstream 463980 29209340 ~ 29222205 (-) True AMCG00011528
AMCG00011524 mRNA downstream 642628 28972225 ~ 29043557 (-) True AMCG00011524
AMCG00011522 mRNA downstream 806032 28874133 ~ 28880153 (-) True AMCG00011522
AMCG00011536 mRNA upstream 148044 29887413 ~ 29920020 (-) False AMCG00011536
AMCG00011535 mRNA upstream 228106 29967475 ~ 29982671 (-) True AMCG00011535
AMCG00011537 mRNA upstream 247690 29987059 ~ 30031892 (-) True AMCG00011537
AMCG00011541 mRNA upstream 315463 30054832 ~ 30058232 (-) True AMCG00011541
AMCG00011540 mRNA upstream 333249 30072618 ~ 30081138 (-) True AMCG00011540
TU134703 other downstream 60798 29625084 ~ 29625387 (-) True G107713
TU134083 other downstream 3169678 26506943 ~ 26516507 (-) True AMCG00011485
TU133710 other downstream 4667853 25012205 ~ 25018332 (-) True AMCG00011445
TU133362 other downstream 6625219 23053316 ~ 23060966 (-) True AMCG00011409
TU132729 other downstream 9818283 19865614 ~ 19867902 (-) True AMCG00011356

Expression Profile