RNA id: TU127831


Basic Information

Item Value
RNA id TU127831
length 301
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G102359
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 287391 ~ 287691 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ggaactggtttacatcaaaatgacagttttggggaggatggcaccgagaataggccaaatagtttggaatcctgctatgagatgtctggagaaaggggcctgtaggtaataaaaactctttgaagtggacgagagccgaaatcccgacatagagctacgaacccgggccaaccggcatttccaaaagatggcatggattgacatcagtcataaatcaagcccccctccaataggacactgggggctgaaactgaaatccaatctcaaaaactcaagaaccaatcacctattgatctgacag

Function

GO: NA

KEGG:

id description
ko04913 Ovarian steroidogenesis

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127814 lncRNA upstream 130651 154155 ~ 156740 (+) True G102344
TU127809 lncRNA upstream 137718 145945 ~ 149673 (+) True G102340
TU127801 lncRNA upstream 151971 135068 ~ 135420 (+) True G102333
TU127833 lncRNA downstream 61 287752 ~ 287971 (+) True G102361
TU127835 lncRNA downstream 105039 392730 ~ 393053 (+) True G102363
TU127845 lncRNA downstream 273195 560886 ~ 563193 (+) True G102373
TU127871 lncRNA downstream 519303 806994 ~ 807224 (+) True G102396
TU127892 lncRNA downstream 678270 965961 ~ 966205 (+) True G102415
AMCG00010788 mRNA upstream 249168 35149 ~ 38223 (+) True AMCG00010788
AMCG00010789 mRNA upstream 255225 30968 ~ 32166 (+) True AMCG00010789
AMCG00010800 mRNA downstream 628043 915734 ~ 925202 (+) True AMCG00010800
AMCG00010801 mRNA downstream 663832 951523 ~ 957231 (+) True AMCG00010801
AMCG00010803 mRNA downstream 689558 977249 ~ 1008155 (+) True AMCG00010803
AMCG00010805 mRNA downstream 724892 1012583 ~ 1028590 (+) True AMCG00010805
AMCG00010804 mRNA downstream 746993 1034684 ~ 1040844 (+) True AMCG00010804
TU128036 other downstream 1502497 1790188 ~ 1791723 (+) True G102531
TU128040 other downstream 1510749 1798440 ~ 1800751 (+) True G102535
TU128102 other downstream 1764455 2052146 ~ 2056347 (+) False AMCG00010832
TU128108 other downstream 1782986 2070677 ~ 2073242 (+) False AMCG00010834
TU128109 other downstream 1782986 2070677 ~ 2073242 (+) False AMCG00010834

Expression Profile