RNA id: TU127892


Basic Information

Item Value
RNA id TU127892
length 245
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G102415
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 965961 ~ 966205 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tttgctcaatactttgttgaagcacctttggcaccaattacagcctcaagtctttttgagtatgatgctgcaagcttggcacacctatttttgggcagtttctcccattcttctttgcaggacctctcaagctccatcaggttggatgggagagtcggtgcacagccattttcagatctctccagagatgttcaatcgggttcaagtctgggctctggctgggccactcaaggacattcacagag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127871 lncRNA upstream 158737 806994 ~ 807224 (+) True G102396
TU127845 lncRNA upstream 402768 560886 ~ 563193 (+) True G102373
TU127835 lncRNA upstream 572908 392730 ~ 393053 (+) True G102363
TU127833 lncRNA upstream 677990 287752 ~ 287971 (+) True G102361
TU127831 lncRNA upstream 678270 287391 ~ 287691 (+) True G102359
TU127905 lncRNA downstream 80197 1046402 ~ 1125183 (+) False AMCG00010809
TU128021 lncRNA downstream 508793 1474998 ~ 1475210 (+) True G102516
TU128023 lncRNA downstream 552194 1518399 ~ 1518698 (+) True G102518
TU128025 lncRNA downstream 581605 1547810 ~ 1548180 (+) True G102520
TU128059 lncRNA downstream 996541 1962746 ~ 1963952 (+) False AMCG00010830
AMCG00010801 mRNA upstream 8730 951523 ~ 957231 (+) True AMCG00010801
AMCG00010800 mRNA upstream 40759 915734 ~ 925202 (+) True AMCG00010800
AMCG00010788 mRNA upstream 927738 35149 ~ 38223 (+) True AMCG00010788
AMCG00010789 mRNA upstream 933795 30968 ~ 32166 (+) True AMCG00010789
AMCG00010803 mRNA downstream 11044 977249 ~ 1008155 (+) True AMCG00010803
AMCG00010805 mRNA downstream 46378 1012583 ~ 1028590 (+) True AMCG00010805
AMCG00010804 mRNA downstream 68479 1034684 ~ 1040844 (+) True AMCG00010804
AMCG00010812 mRNA downstream 127917 1094122 ~ 1099009 (+) True AMCG00010812
AMCG00010808 mRNA downstream 138978 1105183 ~ 1108360 (+) True AMCG00010808
TU128036 other downstream 823983 1790188 ~ 1791723 (+) True G102531
TU128040 other downstream 832235 1798440 ~ 1800751 (+) True G102535
TU128102 other downstream 1085941 2052146 ~ 2056347 (+) False AMCG00010832
TU128108 other downstream 1104472 2070677 ~ 2073242 (+) False AMCG00010834
TU128109 other downstream 1104472 2070677 ~ 2073242 (+) False AMCG00010834

Expression Profile