RNA id: TU127921


Basic Information

Item Value
RNA id TU127921
length 1874
RNA type TUCP
GC content 0.47
exon number 2
gene id G102434
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 975553 ~ 978127 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGTCACCTGTAGAGCTTCACCAGAGACCAAGAGGGACTTACGCATGTTCGTCCCCATGTCCCACCAGCCCGAGGAGTCGGCTCTCTGTGCCGCTGTCCACAACAAGACAACACTGGACGGcTATGATGCACTGCTCCTCCTCTGCCAGGGTCTCCTGGATCGCCACCGACTGGTCCATTTTCACAGGAAGGTCTCTAAGCACGACAGTGTGGAGAGAAAACGGGCTGCGCTTCCCAAATGACGCCTGAAATCCCCGCCGTGGCGCCGATAACTTCAGTGGGTCATGAAGTTTCGCGTTACTGGGCGATGTATTCTGCAGTCCAGATGTTGCACAGCTGCACGCACGGACTGCGCTGCTCTGACGTCACGGCGCCGCAGTGGGGAACCCCTGACAGAGCAGCGGCTGCGCAGCGGCGGTCAGGCGGGGTGTCTCTGCGCATCCGCTTTCACAGGTCAAACGGAGAGAGCAGGGACAACAGCCTGAGGTCTGACGAGAGAAAGAAAGTCGAAGAAACGTGCCCCCCATCCGCTCCGCTGCTCCTGGACCGTCACAACAGCGCTGCCATCGGCCAGAAACAGCTGTGAAAcatatcttttttatttcagtgtctCAGACTCCTTCGTGCATGTAATAGTTGTTACATATACGTTATAAATCATACACTGTAACACTACTGCTCCTACTATAACAACAATACACAGTTTCTCAGAGCAGATGCCATGACGTCTGTCCTTTTTGCTGTGTAGTGGCCTTACTGTGCTGAACACGCAACACTGGCCACTGAAGTCCCTCCAACGTCCCGTGTGTGTCTACAGGTGATGAAGAGTGTGGATGTGGTTGAGGATTCTCGTCACTGcctcatcatcttcatcatcatgattatgttgttgtttgtcattttcatcACCAGCAGCAATCATAATACATTGACAGTTACCAGATTACTACAGTTCATACCCAAAACATAAAGTGCACACCTACATTCTTTCCTTACTTTTCTGATTTGCAATAATTTGGATTTATTGTACAGATTCAATTGAACATGTTATTCTGAAAATGTAGTCGGTGAAAGTCCACTCGGGGCTCCCGAGCAGCCGGGCTTCATCACTGGGACATGAGCTGGACTTCCTGCTGGGGAATAACGACAAGTCTCCTGTGGCTAGGATGGCCCTGGACAGAGCTCAGGCCTGTATCGAGACACAGACAGCGCGAGTGATGTCCAGTCCGCGCTCTATGATTCGGCAGCTGTGCTACTTTAATAATGATTACAAAGAGCAGGTTTGTGCTGcgagaggaagaggagacaACACTGCCGAGCTGCTGCAGACTGGACCCGTCTCAGCACGTGTTGCATTGTGTCAACACGGTCAGGTTGACTCATTCGACATGGAGGAGACGTctattcagatttatttttctgttaaagATTGTTATCATTTCCGTTTTGAAGTAActgacagattttaaaatgttatttctgaacatgcttcttgcattcCATTTGAAACCTCTATTCCACTGAAGTCGAGTCACAGTTTGTAGAGTTTGTTCAATCGACAGAAGCGACAAACATCACTTTTGAATTGTTTATTATGGAATAATCTTTTTGCAAGTAACATTACAggacattaaaacaacatacaattatattgcaaaaataaaagtacttttCACCTGCAGAAGGCAtaagtcatgtttttattgctaTAATTTGTAtgatatagtacacacacacaaacatgatcTAGAATCATTCCTGTCTTGGTGTATTCCAGGGTTGGAGAACAGTGGTAGGGTTTCAATATAAATGCACATTCGTACGACTCTGTTGCTGTTTTAAAGATGATGTACAGATGTGAACCTGATTGACTGA

Function

GO:

id name namespace
GO:0016458 gene silencing biological_process
GO:0031047 gene silencing by RNA biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127919 lncRNA downstream 912 974435 ~ 974641 (-) True G102433
TU127918 lncRNA downstream 9337 965962 ~ 966216 (-) True G102432
TU127844 lncRNA downstream 414756 560434 ~ 560797 (-) True G102372
TU127839 lncRNA downstream 488022 487273 ~ 487531 (-) True G102367
TU127834 lncRNA downstream 687582 287749 ~ 287971 (-) True G102362
TU127932 lncRNA upstream 26990 1005117 ~ 1008128 (-) True G102443
TU127958 lncRNA upstream 171307 1149434 ~ 1151389 (-) True G102466
TU127962 lncRNA upstream 178429 1156556 ~ 1161075 (-) True G102470
TU128003 lncRNA upstream 276593 1254720 ~ 1257986 (-) True G102498
TU128012 lncRNA upstream 438134 1416261 ~ 1459547 (-) True G102507
AMCG00010802 mRNA downstream 32087 935183 ~ 943466 (-) True AMCG00010802
AMCG00010799 mRNA downstream 345660 587856 ~ 629893 (-) True AMCG00010799
AMCG00010798 mRNA downstream 398379 565231 ~ 577174 (-) True AMCG00010798
AMCG00010797 mRNA downstream 782478 157490 ~ 193075 (-) True AMCG00010797
AMCG00010791 mRNA downstream 818756 151074 ~ 156797 (-) True AMCG00010791
AMCG00010806 mRNA upstream 55703 1033830 ~ 1034790 (-) False AMCG00010806
AMCG00010807 mRNA upstream 63874 1042001 ~ 1056921 (-) True AMCG00010807
AMCG00010813 mRNA upstream 154643 1132770 ~ 1136837 (-) True AMCG00010813
AMCG00010819 mRNA upstream 187973 1166100 ~ 1209262 (-) True AMCG00010819
AMCG00010818 mRNA upstream 236278 1214405 ~ 1219326 (-) True AMCG00010818
TU127810 other downstream 825724 145945 ~ 149829 (-) False AMCG00010794
TU127939 other upstream 55794 1033921 ~ 1034874 (-) True AMCG00010806
TU128333 other upstream 1761689 2739816 ~ 2778023 (-) True G102762
TU128350 other upstream 1780351 2758478 ~ 2761264 (-) True G102774
TU128533 other upstream 2201843 3179970 ~ 3182619 (-) True G102902
TU128662 other upstream 2342686 3320813 ~ 3419176 (-) False G102990

Expression Profile