RNA id: TU128025


Basic Information

Item Value
RNA id TU128025
length 371
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G102520
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 1547810 ~ 1548180 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ctgctctagaggcagttcagaggagagcaaccagacttattccaggtctgaagggaatgtcctactgagagactgaggacctgaaccttttcaccctggaacagaggagactacgtggggacttgattcaagtcttcaacatcatgaaaggcatcgaccacatcaaaccagaggagcttttccagatcagcagggacacacgcacccggggacacaaatggaaattgggcttcaaggcattcaggacagaaaacaggagacacttcttcacacagagaggcgtcacaatctcaacaaactccccagcgatgtggctgaagagacaatttgggaacattcaaaaacagactggataggatccttgatcactt

Function

GO:

id name namespace
GO:1901605 alpha-amino acid metabolic process biological_process
GO:1901607 alpha-amino acid biosynthetic process biological_process
GO:0008652 cellular amino acid biosynthetic process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128023 lncRNA upstream 29112 1518399 ~ 1518698 (+) True G102518
TU128021 lncRNA upstream 72600 1474998 ~ 1475210 (+) True G102516
TU127905 lncRNA upstream 422627 1046402 ~ 1125183 (+) False AMCG00010809
TU127892 lncRNA upstream 581605 965961 ~ 966205 (+) True G102415
TU127871 lncRNA upstream 740586 806994 ~ 807224 (+) True G102396
TU128059 lncRNA downstream 414566 1962746 ~ 1963952 (+) False AMCG00010830
TU128134 lncRNA downstream 626616 2174796 ~ 2175064 (+) True G102611
TU128145 lncRNA downstream 703923 2252103 ~ 2252470 (+) True G102622
TU128151 lncRNA downstream 768757 2316937 ~ 2317570 (+) True G102628
TU128193 lncRNA downstream 901020 2449200 ~ 2449881 (+) True G102655
AMCG00010825 mRNA upstream 87821 1458829 ~ 1459989 (+) True AMCG00010825
AMCG00010824 mRNA upstream 90081 1457490 ~ 1457729 (+) True AMCG00010824
AMCG00010823 mRNA upstream 95280 1428644 ~ 1452530 (+) True AMCG00010823
AMCG00010822 mRNA upstream 128843 1378997 ~ 1418967 (+) True AMCG00010822
AMCG00010820 mRNA upstream 178942 1362897 ~ 1368868 (+) True AMCG00010820
AMCG00010826 mRNA downstream 302604 1850784 ~ 1859425 (+) True AMCG00010826
AMCG00010830 mRNA downstream 396875 1945055 ~ 1963965 (+) True AMCG00010830
AMCG00010831 mRNA downstream 431439 1979619 ~ 1986242 (+) True AMCG00010831
AMCG00010832 mRNA downstream 491334 2039514 ~ 2064344 (+) True AMCG00010832
AMCG00010833 mRNA downstream 519485 2067665 ~ 2069500 (+) True AMCG00010833
TU128036 other downstream 242008 1790188 ~ 1791723 (+) True G102531
TU128040 other downstream 250260 1798440 ~ 1800751 (+) True G102535
TU128102 other downstream 503966 2052146 ~ 2056347 (+) False AMCG00010832
TU128108 other downstream 522497 2070677 ~ 2073242 (+) False AMCG00010834
TU128109 other downstream 522497 2070677 ~ 2073242 (+) False AMCG00010834

Expression Profile