RNA id: TU128036


Basic Information

Item Value
RNA id TU128036
length 1536
RNA type TUCP
GC content 0.45
exon number 1
gene id G102531
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 1790188 ~ 1791723 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TACAACTACATtcgtttattaatttaatataacaaGATGATAATGCACAGTCAGTTTAGCCTTGGTTTATTGAGCTGCCAGTCTCTGTCTCTGATCGAGTCACTGGTCGCTCCGGGAGCTGGTCCAGGTGCGACCTCATCTCGCCCCACGGCCCCGTgcagaaacacaaaagacaTCACTGGACAGACATCGGCCGGAACGTCCAGAGCAGCGCTGTCGTCTCTCCGCCGGGCAGAGTCAGGGATGCACTTCTCACACCGCGCAGACGAGCACAGCGCAGCGCAGTCAGAGCCCAACGCAGCCCTGTGCCGTGCCATCGAGACGCACGCACTTGTGCAGAAACGCACTGCAAAGCACGAAGAGTCAGGAGCATCTACAGAAGGACCTTTATGTCGCAGTAAAGCAAAGGCCGCTGGGAAGAGACGGAATCGGATCCTGTCCCCTGACACACATCCATGCTTTCAAGTCCGACACGTCATGTTTAAACCTTCTCATGAATAAAGTGCTGAATcgttcaatgaaaataaatcacagggGTGAACAAagaccttctctctctccttctttatTTTGCTTCACTTAAGCCCCGGGGAGGAGTAGCAGGTGTGAGAGTGTTTTGTGATCTGCACTTTAATTGATCCACTCCTCTTCCTCAGGGAGAAACACTGAGTTCCTGTAGCTCGGGCTTGAATGATCAAACACACGGCAGCACTGCGCTGCAATcacaagacacagagacatcTCGACACCCGGGCCTGAtgctcacagacacacaacttCTACACAAATGACATCTTTGTCTACTTCAACAGAACCAACACTGAAACGACTTGTAACGGCTGAAAAAAACTGTCCGTATATTTAAGACAGACTGTGTAAATAAAGCgtatgtatttcaatttgaCAGCACCTATAATTGAGTATTTTCCTATAGATGCCACTCGTTTAATATGCTGCTATTGTTCGTGTTTCTGCCGATTTGTAAACAGTGTTTAAATCGATGCGTAGTTTAGGGCTTGACAAATCAACCCCCTCCTCTTGCCTGGCTGGGCGGCACAGATTCACTTATTGCAAGTCCAGTTCACATTAGATGCGAATAAAAGACCCGGAGGCAGGAGGACGTGTTTTTGAGTCTCCAGCTCCAGTCAGGTATGAAAGCAGCTCGTATAACCTCGGGCAGATCAGAGACGTGCAGTGAAATTCCCACAGAGACGGCATCGCTGATCGTCCTCTTAGAAGAGACAGAGGTTTGATCTACACAGTGCTGTGATTCTTACTTTTCCTTTCAACTGAAATCACTTCTTGACTTAATAAATATTCTTCAGTAGTCAGACAACCGAGAACGTGTGTTTTGGACAGTGGATgcaattgtcattttttaattttctgattGACTTAAATCACTgtgtacaatttaattattttgtctttaagcAAAATACTAATTATCCCAATGGCAAAGGTTTTAACTATATTTTTCTTCACCTCTTCAGGCTAGGATCCGTCATTTAAAGGtgaagagattttgttttttgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128025 lncRNA upstream 242008 1547810 ~ 1548180 (+) True G102520
TU128023 lncRNA upstream 271490 1518399 ~ 1518698 (+) True G102518
TU128021 lncRNA upstream 314978 1474998 ~ 1475210 (+) True G102516
TU127905 lncRNA upstream 665005 1046402 ~ 1125183 (+) False AMCG00010809
TU127892 lncRNA upstream 823983 965961 ~ 966205 (+) True G102415
TU128059 lncRNA downstream 171023 1962746 ~ 1963952 (+) False AMCG00010830
TU128134 lncRNA downstream 383073 2174796 ~ 2175064 (+) True G102611
TU128145 lncRNA downstream 460380 2252103 ~ 2252470 (+) True G102622
TU128151 lncRNA downstream 525214 2316937 ~ 2317570 (+) True G102628
TU128193 lncRNA downstream 657477 2449200 ~ 2449881 (+) True G102655
AMCG00010825 mRNA upstream 330199 1458829 ~ 1459989 (+) True AMCG00010825
AMCG00010824 mRNA upstream 332459 1457490 ~ 1457729 (+) True AMCG00010824
AMCG00010823 mRNA upstream 337658 1428644 ~ 1452530 (+) True AMCG00010823
AMCG00010822 mRNA upstream 371221 1378997 ~ 1418967 (+) True AMCG00010822
AMCG00010820 mRNA upstream 421320 1362897 ~ 1368868 (+) True AMCG00010820
AMCG00010826 mRNA downstream 59061 1850784 ~ 1859425 (+) True AMCG00010826
AMCG00010830 mRNA downstream 153332 1945055 ~ 1963965 (+) True AMCG00010830
AMCG00010831 mRNA downstream 187896 1979619 ~ 1986242 (+) True AMCG00010831
AMCG00010832 mRNA downstream 247791 2039514 ~ 2064344 (+) True AMCG00010832
AMCG00010833 mRNA downstream 275942 2067665 ~ 2069500 (+) True AMCG00010833
TU128040 other downstream 6717 1798440 ~ 1800751 (+) True G102535
TU128102 other downstream 260423 2052146 ~ 2056347 (+) False AMCG00010832
TU128108 other downstream 278954 2070677 ~ 2073242 (+) False AMCG00010834
TU128109 other downstream 278954 2070677 ~ 2073242 (+) False AMCG00010834
TU128107 other downstream 279683 2071406 ~ 2073242 (+) True AMCG00010834

Expression Profile