RNA id: TU128049


Basic Information

Item Value
RNA id TU128049
length 460
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G102543
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 1807629 ~ 1808088 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

agagctcatctggatactgtgggcagttctgggctccacacttcaagaaagatatcgctgctctagaggcagttcagaggagagcaaccagacttattccaggtctgaagggaatgtcctactgagagactgaggacctgaaccttttcaccctggaacagaggagactacgtggggacttgatccaagtcttcaaaatcatgaaaggcatcgagcacatcaaaccagaggagcttttccagatcagcagggacacacgcacccggggacacaaatggaaattgggcttcaaggcattcaagacagaaaacaggagacacttcttcacacagagaggcgtcacaatctgaacaaactccccagcgatgtggctgaagagacaatttgggaacattcaaaaacagactggataggatccttgatcacttagttattaatggacaccaaacgagcacgatgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128030 lncRNA downstream 139345 1668038 ~ 1668284 (-) True G102525
TU128026 lncRNA downstream 259534 1547816 ~ 1548095 (-) True G102521
TU128024 lncRNA downstream 288930 1518375 ~ 1518699 (-) True G102519
TU128012 lncRNA downstream 348082 1416261 ~ 1459547 (-) True G102507
TU128003 lncRNA downstream 549643 1254720 ~ 1257986 (-) True G102498
TU128070 lncRNA upstream 49372 1857460 ~ 1912953 (-) True G102562
TU128080 lncRNA upstream 154194 1962282 ~ 1963953 (-) True G102572
TU128132 lncRNA upstream 363442 2171530 ~ 2171801 (-) True G102609
TU128138 lncRNA upstream 369188 2177276 ~ 2177516 (-) True G102615
TU128146 lncRNA upstream 444031 2252119 ~ 2252467 (-) True G102623
AMCG00010829 mRNA downstream 6869 1798219 ~ 1800760 (-) True AMCG00010829
AMCG00010828 mRNA downstream 11037 1792777 ~ 1796592 (-) True AMCG00010828
AMCG00010817 mRNA downstream 564979 1222087 ~ 1242650 (-) True AMCG00010817
AMCG00010818 mRNA downstream 588303 1214405 ~ 1219326 (-) True AMCG00010818
AMCG00010819 mRNA downstream 598367 1166100 ~ 1209262 (-) True AMCG00010819
AMCG00010827 mRNA upstream 13563 1821651 ~ 1836885 (-) True AMCG00010827
AMCG00010836 mRNA upstream 335030 2143118 ~ 2180497 (-) True AMCG00010836
AMCG00010835 mRNA upstream 372416 2180504 ~ 2182472 (-) True AMCG00010835
AMCG00010840 mRNA upstream 524128 2332216 ~ 2336743 (-) True AMCG00010840
AMCG00010839 mRNA upstream 557385 2365473 ~ 2382245 (-) True AMCG00010839
TU127939 other downstream 772755 1033921 ~ 1034874 (-) True AMCG00010806
TU127921 other downstream 829502 975553 ~ 978127 (-) True G102434
TU127810 other downstream 1657800 145945 ~ 149829 (-) False AMCG00010794
TU128333 other upstream 931728 2739816 ~ 2778023 (-) True G102762
TU128350 other upstream 950390 2758478 ~ 2761264 (-) True G102774
TU128533 other upstream 1371882 3179970 ~ 3182619 (-) True G102902
TU128662 other upstream 1512725 3320813 ~ 3419176 (-) False G102990
TU128675 other upstream 1517770 3325858 ~ 3327559 (-) False AMCG00010895

Expression Profile