RNA id: TU128070


Basic Information

Item Value
RNA id TU128070
length 1064
lncRNA type inter_gene
GC content 0.54
exon number 2
gene id G102562
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 1857460 ~ 1912953 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGGCCCCACTGGGAGACTGGAAAACTGATCCAAAACGGCACACgagacacacacatgacacCAAGACACCCTTCAGAGTGCCTAAGTGGAACGCAAGAGTGACAGGGTGGCTGTGGGGGGCGCAGGTGCGTCTGCACACGTGTGGAGGAGACAGTGGGCGTGTCGCAGTGTCACGTGGAGCGAGAGTCGGCACGATCGGGGCGTTTTCAGTTTCACCCATCAAAGACACGCCAGTCGCTCGTCCGACGCCCATCACTGGAACTTTCACCGGTCAGGAATGTTTCGGACGCACTTCTGGTACAGAAGAGTCAACCGATTAAACCCAGAAGAACAAAGCAGCGAGATTATTACTTTACTGTAGTGTACGAATTTGCATTCATGcctgaaattaactgaaaatgagGAAAAAGAACCAAAAACAACTCGAGCACGGCAAGACAAATGCTCATGGGAGAAATAACAGTCATCGGGCCGCTTCCACAGACCGGATCGGCACCAGTCCTGGACTAAACCCGGTCAGTTCCGCAGTCCTGAACTCGTGCGGATCGACGTCTGCGGTTATTCTTTGGCACAGCTGAGCACCAGAGCCGAGTCGGTAATTGGTTTGAGCTGCTCCCTGCACTGATGATGGATGGGCTTCTTTAatcctttaaaaacatgttaacacttaaaaaacacTCAATTCTTAATGTATGCATCTTTAGGCAGATCGGCCCCGTATTTACAGCGCGTGGATTACAGGCACCGAGGCGCGTCTTTTAAATCacccaaaaacagaaaagaaaaggcactgCACACGAGTGAAGCGCAGCAGCGACTGCCACCTCGGAATAACTTGATTTCCatgagttttaaatgtattttgcgTGCAAGCCAGCGCCCCCCCAGTCCCCCCCAACGCCCGGCCCCGGCCCCTCAGTTGAACTCCCGGTTGGGCAGGACGAGAGGCGCCACCAGGGTCCAGAGGTAGAGCGCCAGGCCCAGCCAGCTGGAGCTGATCTTCACCCAGACCGCGGGCATGGTGCTGACCATGGCCTGGTAGGTGGTGTCCGgcctgaggaaga

Function

GO:

id name namespace
GO:0060841 venous blood vessel development biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128049 lncRNA downstream 49372 1807629 ~ 1808088 (-) True G102543
TU128030 lncRNA downstream 189176 1668038 ~ 1668284 (-) True G102525
TU128026 lncRNA downstream 309365 1547816 ~ 1548095 (-) True G102521
TU128024 lncRNA downstream 338761 1518375 ~ 1518699 (-) True G102519
TU128012 lncRNA downstream 397913 1416261 ~ 1459547 (-) True G102507
TU128080 lncRNA upstream 49329 1962282 ~ 1963953 (-) True G102572
TU128132 lncRNA upstream 258577 2171530 ~ 2171801 (-) True G102609
TU128138 lncRNA upstream 264323 2177276 ~ 2177516 (-) True G102615
TU128146 lncRNA upstream 339166 2252119 ~ 2252467 (-) True G102623
TU128152 lncRNA upstream 403812 2316765 ~ 2317264 (-) True G102629
AMCG00010827 mRNA downstream 20575 1821651 ~ 1836885 (-) True AMCG00010827
AMCG00010829 mRNA downstream 56700 1798219 ~ 1800760 (-) True AMCG00010829
AMCG00010828 mRNA downstream 60868 1792777 ~ 1796592 (-) True AMCG00010828
AMCG00010817 mRNA downstream 614810 1222087 ~ 1242650 (-) True AMCG00010817
AMCG00010818 mRNA downstream 638134 1214405 ~ 1219326 (-) True AMCG00010818
AMCG00010836 mRNA upstream 230165 2143118 ~ 2180497 (-) True AMCG00010836
AMCG00010835 mRNA upstream 267551 2180504 ~ 2182472 (-) True AMCG00010835
AMCG00010840 mRNA upstream 419263 2332216 ~ 2336743 (-) True AMCG00010840
AMCG00010839 mRNA upstream 452520 2365473 ~ 2382245 (-) True AMCG00010839
AMCG00010841 mRNA upstream 529274 2442227 ~ 2449554 (-) True AMCG00010841
TU127939 other downstream 822586 1033921 ~ 1034874 (-) True AMCG00010806
TU127921 other downstream 879333 975553 ~ 978127 (-) True G102434
TU127810 other downstream 1707631 145945 ~ 149829 (-) False AMCG00010794
TU128333 other upstream 826863 2739816 ~ 2778023 (-) True G102762
TU128350 other upstream 845525 2758478 ~ 2761264 (-) True G102774
TU128533 other upstream 1267017 3179970 ~ 3182619 (-) True G102902
TU128662 other upstream 1407860 3320813 ~ 3419176 (-) False G102990
TU128675 other upstream 1412905 3325858 ~ 3327559 (-) False AMCG00010895

Expression Profile