RNA id: TU128138


Basic Information

Item Value
RNA id TU128138
length 241
lncRNA type intronic
GC content 0.33
exon number 1
gene id G102615
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 2177276 ~ 2177516 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tgaatataaaaaggTTAATCTTTTCCTGCactaataaattaatttctggAGATGTGTTAATGTATGATTTGAAAACACTCTTTTATTCAGCCTATTCTGATGCCGAATTAATTCAATCAACATTAATTCCAGTCAGAAATAAAACAGATCAGCGTTTGGATAGAATGAAGCACATGGAGGCAGACATGGAtcctgtatatatgtatattactgAGGAACATTCAGATGCAATTGGTGGTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128132 lncRNA downstream 5475 2171530 ~ 2171801 (-) True G102609
TU128080 lncRNA downstream 213323 1962282 ~ 1963953 (-) True G102572
TU128070 lncRNA downstream 264323 1857460 ~ 1912953 (-) True G102562
TU128049 lncRNA downstream 369188 1807629 ~ 1808088 (-) True G102543
TU128030 lncRNA downstream 508992 1668038 ~ 1668284 (-) True G102525
TU128146 lncRNA upstream 74603 2252119 ~ 2252467 (-) True G102623
TU128152 lncRNA upstream 139249 2316765 ~ 2317264 (-) True G102629
TU128166 lncRNA upstream 185364 2362880 ~ 2363110 (-) True G102639
TU128189 lncRNA upstream 209207 2386723 ~ 2437698 (-) True G102651
TU128213 lncRNA upstream 304381 2481897 ~ 2488417 (-) True AMCG00010843
AMCG00010827 mRNA downstream 340391 1821651 ~ 1836885 (-) True AMCG00010827
AMCG00010829 mRNA downstream 376516 1798219 ~ 1800760 (-) True AMCG00010829
AMCG00010828 mRNA downstream 380684 1792777 ~ 1796592 (-) True AMCG00010828
AMCG00010817 mRNA downstream 934626 1222087 ~ 1242650 (-) True AMCG00010817
AMCG00010818 mRNA downstream 957950 1214405 ~ 1219326 (-) True AMCG00010818
AMCG00010835 mRNA upstream 2988 2180504 ~ 2182472 (-) True AMCG00010835
AMCG00010840 mRNA upstream 154700 2332216 ~ 2336743 (-) True AMCG00010840
AMCG00010839 mRNA upstream 187957 2365473 ~ 2382245 (-) True AMCG00010839
AMCG00010841 mRNA upstream 264711 2442227 ~ 2449554 (-) True AMCG00010841
AMCG00010843 mRNA upstream 304358 2481874 ~ 2496446 (-) False AMCG00010843
TU127939 other downstream 1142402 1033921 ~ 1034874 (-) True AMCG00010806
TU127921 other downstream 1199149 975553 ~ 978127 (-) True G102434
TU127810 other downstream 2027447 145945 ~ 149829 (-) False AMCG00010794
TU128333 other upstream 562300 2739816 ~ 2778023 (-) True G102762
TU128350 other upstream 580962 2758478 ~ 2761264 (-) True G102774
TU128533 other upstream 1002454 3179970 ~ 3182619 (-) True G102902
TU128662 other upstream 1143297 3320813 ~ 3419176 (-) False G102990
TU128675 other upstream 1148342 3325858 ~ 3327559 (-) False AMCG00010895

Expression Profile