RNA id: TU128152


Basic Information

Item Value
RNA id TU128152
length 500
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G102629
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 2316765 ~ 2317264 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

attattgcagaaataacataaataacatactcgcgcataactatttctgtgaaagtctaGACACTTGAACTCACGGCCATCCCCTCACCtctattttggaaatgtcaaaccacaatctccctatatttatattatgttttgaggaacagctcagagctgacaacataaacaatatacatgctgctcttcagacaaaccagaaataagataGAGTCCCACGTCATCTAGCGCTAGGCAAACCGTGCAGACATGTCAACCGAAACTCTCGAGTGTGTTAGGAGTTATGATATCGGACACAttccatgtctgcctagcaacttaatctgtaatatgtcctgCCCCGAAATGgacttctgacatgtataaaacgGTGTGCAGtggcagaaataaactgaagacaaacgatctggcattgtgtcggtgactttTTTCTTCCCGAGCTCGTCTCCTGTggaggatccaccatcctgcactgacggcgctgggttatcctagtccag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128146 lncRNA downstream 64298 2252119 ~ 2252467 (-) True G102623
TU128138 lncRNA downstream 139249 2177276 ~ 2177516 (-) True G102615
TU128132 lncRNA downstream 144964 2171530 ~ 2171801 (-) True G102609
TU128080 lncRNA downstream 352812 1962282 ~ 1963953 (-) True G102572
TU128070 lncRNA downstream 403812 1857460 ~ 1912953 (-) True G102562
TU128166 lncRNA upstream 45616 2362880 ~ 2363110 (-) True G102639
TU128189 lncRNA upstream 69459 2386723 ~ 2437698 (-) True G102651
TU128213 lncRNA upstream 164633 2481897 ~ 2488417 (-) True AMCG00010843
TU128289 lncRNA upstream 357299 2674563 ~ 2675136 (-) True G102725
TU128365 lncRNA upstream 472206 2789470 ~ 2833183 (-) True G102785
AMCG00010835 mRNA downstream 134293 2180504 ~ 2182472 (-) True AMCG00010835
AMCG00010836 mRNA downstream 136268 2143118 ~ 2180497 (-) True AMCG00010836
AMCG00010827 mRNA downstream 479880 1821651 ~ 1836885 (-) True AMCG00010827
AMCG00010829 mRNA downstream 516005 1798219 ~ 1800760 (-) True AMCG00010829
AMCG00010828 mRNA downstream 520173 1792777 ~ 1796592 (-) True AMCG00010828
AMCG00010840 mRNA upstream 14952 2332216 ~ 2336743 (-) True AMCG00010840
AMCG00010839 mRNA upstream 48209 2365473 ~ 2382245 (-) True AMCG00010839
AMCG00010841 mRNA upstream 124963 2442227 ~ 2449554 (-) True AMCG00010841
AMCG00010843 mRNA upstream 164610 2481874 ~ 2496446 (-) False AMCG00010843
AMCG00010842 mRNA upstream 182541 2499805 ~ 2502500 (-) True AMCG00010842
TU127939 other downstream 1281891 1033921 ~ 1034874 (-) True AMCG00010806
TU127921 other downstream 1338638 975553 ~ 978127 (-) True G102434
TU127810 other downstream 2166936 145945 ~ 149829 (-) False AMCG00010794
TU128333 other upstream 422552 2739816 ~ 2778023 (-) True G102762
TU128350 other upstream 441214 2758478 ~ 2761264 (-) True G102774
TU128533 other upstream 862706 3179970 ~ 3182619 (-) True G102902
TU128662 other upstream 1003549 3320813 ~ 3419176 (-) False G102990
TU128675 other upstream 1008594 3325858 ~ 3327559 (-) False AMCG00010895

Expression Profile