RNA id: TU128189


Basic Information

Item Value
RNA id TU128189
length 744
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G102651
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 2386723 ~ 2437698 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aaaacaaaaagcagataGTTGTCACCTTTTGAACATTCAGAAAAGCaacatatttatctatttataaatTAGTCTAATAGTTTTTGCcttccccatccctctctcttaAAGATACAGCTCTCATTATTCACTCTGATCTAGGCGTcacatttgcttatttatgttttttgttgtgaaaAATAAGGAATCAACTTCACAGAGGTACACACTACTTCCGGTCCAAAAATCATCTCATTGTGGGTTGTGGCTTCCTTATAGAGTGTGTTTCTTACACTGGCCAGCTCTGTTCTCGAATAATTCAcgtaaaacaacacaaaaacaaaacacccgGATCAGATTATCTGATAAATCCCTGCATTATGACCCTGGAAATCTTGTGTTTGGGTTTGCATGCGCGTCTTGGACACAGAAGCTGAAAATCAGACAACCCTCCTTGtagggtaaaacaaaaaaaagtcaaattacaCATCCACTCCTCTTTCCTTTACAAAGGATATCTGGTGAAACTACACTGGGTCAGGTTTGAGGAATGAGTGAGCAGAATACCCACTGAAGTGAACAACTCCAGTTAAGGAACAGCGATTATTATCCCATGTCTCTTCACACACATTAGCAACACTGTGCATCTGGTTTAATGTGCGGCTTAATGTTTGATCTCTGCTGTGGGAGATAAATTAAGTGCAGTACTCAGCTCCTATTCCCGTTACTGTGCACTAGCATGTTATGTTCAATAAAGTGCATTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128166 lncRNA downstream 23613 2362880 ~ 2363110 (-) True G102639
TU128152 lncRNA downstream 69459 2316765 ~ 2317264 (-) True G102629
TU128146 lncRNA downstream 134256 2252119 ~ 2252467 (-) True G102623
TU128138 lncRNA downstream 209207 2177276 ~ 2177516 (-) True G102615
TU128132 lncRNA downstream 214922 2171530 ~ 2171801 (-) True G102609
TU128213 lncRNA upstream 44199 2481897 ~ 2488417 (-) True AMCG00010843
TU128289 lncRNA upstream 236865 2674563 ~ 2675136 (-) True G102725
TU128365 lncRNA upstream 351772 2789470 ~ 2833183 (-) True G102785
TU128418 lncRNA upstream 517062 2954760 ~ 2954975 (-) True G102816
TU128445 lncRNA upstream 552949 2990647 ~ 2991248 (-) True G102834
AMCG00010839 mRNA downstream 4478 2365473 ~ 2382245 (-) True AMCG00010839
AMCG00010840 mRNA downstream 49980 2332216 ~ 2336743 (-) True AMCG00010840
AMCG00010835 mRNA downstream 204251 2180504 ~ 2182472 (-) True AMCG00010835
AMCG00010836 mRNA downstream 206226 2143118 ~ 2180497 (-) True AMCG00010836
AMCG00010827 mRNA downstream 549838 1821651 ~ 1836885 (-) True AMCG00010827
AMCG00010841 mRNA upstream 4529 2442227 ~ 2449554 (-) True AMCG00010841
AMCG00010843 mRNA upstream 44176 2481874 ~ 2496446 (-) False AMCG00010843
AMCG00010842 mRNA upstream 62107 2499805 ~ 2502500 (-) True AMCG00010842
AMCG00010844 mRNA upstream 69022 2506720 ~ 2519791 (-) True AMCG00010844
AMCG00010845 mRNA upstream 99500 2537198 ~ 2539438 (-) True AMCG00010845
TU127939 other downstream 1351849 1033921 ~ 1034874 (-) True AMCG00010806
TU127921 other downstream 1408596 975553 ~ 978127 (-) True G102434
TU127810 other downstream 2236894 145945 ~ 149829 (-) False AMCG00010794
TU128333 other upstream 302118 2739816 ~ 2778023 (-) True G102762
TU128350 other upstream 320780 2758478 ~ 2761264 (-) True G102774
TU128533 other upstream 742272 3179970 ~ 3182619 (-) True G102902
TU128662 other upstream 883115 3320813 ~ 3419176 (-) False G102990
TU128675 other upstream 888160 3325858 ~ 3327559 (-) False AMCG00010895

Expression Profile