RNA id: TU128289


Basic Information

Item Value
RNA id TU128289
length 574
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G102725
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 2674563 ~ 2675136 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TAATGAGTGACAGAGGAGTTCAAGAGATGTGTGAAACCCATAGGAGTGTGACTGGGGCTCTGTCCACATtaagatcataagaacataagacagtgtccaatcgaggggaggccattcgccccatcatgctcgtttggtgtccattaataactaagtgatcaaggatcctatccagtctgtttttgaatgttcccaaatggtctcttcagccacatcgctggggagtttgttcagaaagtgacgcctctctgtgtgaagaagtgtctcctgttttctgtcttgaatgccttgaagcccaatttccatttgtgtccccgggtgcgtgtgtccctgctgatctggaaaagctcctctggtttgatgtggtcgatgcctttcatgattttgaagacttggatcaagtccccacgtagtctcctctgttccagggtgaaaaggttcaggtcctcagtctctcagtaggacattcccttcagacctggaataagtctggttgcatGCAGACTTTGCACCCTGGGGGTAAAAGAAAAGGGGGATTTTAACAGAACCCAGGTCTGGAGAGATTGTGTCCTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128213 lncRNA downstream 186146 2481897 ~ 2488417 (-) True AMCG00010843
TU128189 lncRNA downstream 236865 2386723 ~ 2437698 (-) True G102651
TU128166 lncRNA downstream 311453 2362880 ~ 2363110 (-) True G102639
TU128152 lncRNA downstream 357299 2316765 ~ 2317264 (-) True G102629
TU128146 lncRNA downstream 422096 2252119 ~ 2252467 (-) True G102623
TU128365 lncRNA upstream 114334 2789470 ~ 2833183 (-) True G102785
TU128418 lncRNA upstream 279624 2954760 ~ 2954975 (-) True G102816
TU128445 lncRNA upstream 315511 2990647 ~ 2991248 (-) True G102834
TU128510 lncRNA upstream 470128 3145264 ~ 3145687 (-) True G102887
TU128511 lncRNA upstream 484701 3159837 ~ 3160036 (-) True G102888
AMCG00010848 mRNA downstream 12705 2649261 ~ 2661858 (-) True AMCG00010848
AMCG00010849 mRNA downstream 36508 2630474 ~ 2638055 (-) True AMCG00010849
AMCG00010850 mRNA downstream 46046 2625003 ~ 2628517 (-) True AMCG00010850
AMCG00010852 mRNA downstream 51235 2619961 ~ 2623328 (-) True AMCG00010852
AMCG00010845 mRNA downstream 135125 2537198 ~ 2539438 (-) True AMCG00010845
AMCG00010851 mRNA upstream 11930 2687066 ~ 2689410 (-) True AMCG00010851
AMCG00010857 mRNA upstream 19269 2694405 ~ 2706621 (-) True AMCG00010857
AMCG00010858 mRNA upstream 37391 2712527 ~ 2723800 (-) True AMCG00010858
AMCG00010859 mRNA upstream 87390 2762526 ~ 2767269 (-) True AMCG00010859
AMCG00010867 mRNA upstream 269059 2944195 ~ 2945511 (-) True AMCG00010867
TU127939 other downstream 1639689 1033921 ~ 1034874 (-) True AMCG00010806
TU127921 other downstream 1696436 975553 ~ 978127 (-) True G102434
TU127810 other downstream 2524734 145945 ~ 149829 (-) False AMCG00010794
TU128333 other upstream 64680 2739816 ~ 2778023 (-) True G102762
TU128350 other upstream 83342 2758478 ~ 2761264 (-) True G102774
TU128533 other upstream 504834 3179970 ~ 3182619 (-) True G102902
TU128662 other upstream 645677 3320813 ~ 3419176 (-) False G102990
TU128675 other upstream 650722 3325858 ~ 3327559 (-) False AMCG00010895

Expression Profile