RNA id: TU128350


Basic Information

Item Value
RNA id TU128350
length 2732
RNA type TUCP
GC content 0.49
exon number 2
gene id G102774
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 2758478 ~ 2761264 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACACAATTGTCCGCTTTATTTGATATTcccatatatttattatcatctTCTTGGAAGACAATCGCTTTTCTTTCGTTTTTTTCTTGGCCAAAAAAAGGGCATTGGTCCAAAAGGCAAAGCAATAGCTCAGAGCAGAGGTTCCCAGCCCGGCTCCTGGGGGCCCCACAGTCCGCCGAGGTTTCAATCAAGCAACTGAAACCgaaattgaactaatcatttgctTAAGTTTTTTTAATGTCCAGCTTGCAGACTTTAAGCACAAAGGTTATATTTCCCCACTggtttataataatgaaaacactcTGATCAGCCAGATTGTGACTTAAGGGTGCGATTAAGCAAGCAGCGCGGTGGGGTCCCGGGGCAGGGCCGAGCGAATAAAGCGTGACTCGTGGAATGTCCCGATCTGTGCCcgaaaaacagagagagggtgGTGGGGTAGGAAGGGCAGGGGTGTGGGTGTGAGACAGTGGAATGAAACAaatgagtgtgtctctgtgtcgaGAGAGTGTGTTGTGATCCCAGGTTTAATAAAAGTCGCCCCCGTCATCCCCACCCCCTTTTCAGTccactggagagagagggaagtggGTCTGGTTCTGTGTGCCGGCCCAGTCCAGAAACAAAGTCCGCTAGAGCACCAACATTCTCAACGCCATCCTGGTTACTGCATTATAGTGGCAGAGGTGCGCTGCCAAAACCTTTGGATGTCACTGTCCCTACTGCATTGTGAGATACTGCGTCTCCCCGGGGCGCCGGTGCGTCCGAGAGGCTGAAATACTGATTGCTGGTTAGCAGGACTACACTACCCTGGCCTTCAGAGACTAGACCAGCGGCAGGAATGACAGGACAGACTctctgaacaaaaaacaaacaaaatgcattagttTTAACTGCCTAGAGGTACAGAGGATGATGAGACGGACCCCAGCCAGGCCCAAAAAAGCCAGAGAGCCGCTATACGACTCAACTTGGCCTCCACACAAACTGATTGAGAGGAGCACGGCTAAAGCAGTGAACGGCCCGAGCCAACTGATGTAAATCAAGCATGACGTCCCTCTCCCCGCCAACACGAACTGCACTGCTGATGGCCAGGACAGGAGCCAAGCTGACATCACACAAAAGAGTACATAATCTGGgaacaattaatacaaactCTGGTCCAGCAACACATTCAAAAAACACTGGACTTGAAAGTGACTTTGTGTTTCCGTGTTGCTTAAATGTGACGTGTGCTACCAACAGGAAACGCTTTAAACTAGTGCATAGACATTTCAATACTGCATCTCAGGAGTATCAGAAGAACTCGAAGGTCTGTCCTTAAGGGAAAATGATCAGATGGTTTGGAGAAGaacgaaacaaaaacaaaaaaacgtttatttcatacatattgGAGAGGTAAGAGTGACTCAGCTTTTGTGTTGTGACAAGCTAGTGGGAGGTCCCCAAGATGAACTCTGCAGAGACCTCAACACCAAGGAATCGTCATCTCAGTCACCAACAGACTAGCGAAGGTGTGGGAATGTGCTTCAGCGAGGAGCGAGGTCCAACGAGGGACTGCTTGCGTCGAGAACGGGGTCGGACCCTTTCAATACTTGGATGGACACTCAGACGGATAGGACTGCAATCTAATGAGGAAGCATCCGACtaactatcatttaattaaaaggaaattactGCCAGCGTTATCTCAAACCCGTTTTAAGACTTGGAAATCTACGAAGACGATGTTTCTTTGGATGTTGGAAGTAAGACTATTTCGTTAAGAGGTTCGGGGGACTCGGCTGGATTAAGACCTGCAGGAAGAGGCGGCTTCACGGGCGATGGATCATTGGCACCAAGTAAACACCACTGAACCGCCTCCCACAGAAAATAGGTTCGTTCCTGGTTAAGAGTTTAGACTGTAAACATCAggttatatacacacaccactAAACTAGGAGGTTTACAGTGTCGAGGTGTAAAAGTTTGATAGAAAAAGGGCTGATCTAAAGTCAGAGCAGAGGCGGAGTTTAAGGTCCCGTGATTTGCGTGTGCATGAGTTTAATGCGGCCAGTGCTTCTTAAACAAGTGCTTTCTATCGAataacgaaacaaaacaaagattatAACTCTTCCTACTAATGAGAATATCCGCTCCTATCAGTGTGGCACTGCGGGCGAGTCGACCAATCACAGATCAGCTCGTCTATTCGCCACTCTACCCTCCACATTTCCTATTCACCCTAGCGGTTGAGACATCGAGGAGATTTACTCTGGAATGAGGAAGATTAGAGAGAAAAgaacgaaacaaaacaacagcaaagcgGGACAGATGACTGGCAGGGAAGCGTGTTGCATCCAGGCGATACACGGGGCTGCTGGGTGGGTGACCCGCGAGGATGTGCTCGTTTTTTTTTGGCATGACGTTGGGAAAAAAACGGGCAAAAGGCGCCAGCTGCGGTCCGAGCCCCTCCAGCCCCCTCACTGTGGACCTCTCAGTCCAGCTTCAGGAACTTCTCCACGGCGTCGTCCTCCACCGCCTCCGAGAACATCTGGTAGTCCTGGGAAGGGAGCAAGAACACGTGAACATATAAACCTACGCCCAGTTCCCatgtgtgtgcacacacacacacacacacacacacacacacacacacgtttcaACAAGTCAGTCTCCAGGCTCAGGGGAAGGGTCATCGACACTTACTCAACACTCGGCCCGCGCCCAAGCAAAGTCCCTCAGGATtcaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128289 lncRNA downstream 83342 2674563 ~ 2675136 (-) True G102725
TU128213 lncRNA downstream 270061 2481897 ~ 2488417 (-) True AMCG00010843
TU128189 lncRNA downstream 320780 2386723 ~ 2437698 (-) True G102651
TU128166 lncRNA downstream 395368 2362880 ~ 2363110 (-) True G102639
TU128152 lncRNA downstream 441214 2316765 ~ 2317264 (-) True G102629
TU128365 lncRNA upstream 28206 2789470 ~ 2833183 (-) True G102785
TU128418 lncRNA upstream 193496 2954760 ~ 2954975 (-) True G102816
TU128445 lncRNA upstream 229383 2990647 ~ 2991248 (-) True G102834
TU128510 lncRNA upstream 384000 3145264 ~ 3145687 (-) True G102887
TU128511 lncRNA upstream 398573 3159837 ~ 3160036 (-) True G102888
AMCG00010858 mRNA downstream 34678 2712527 ~ 2723800 (-) True AMCG00010858
AMCG00010857 mRNA downstream 51857 2694405 ~ 2706621 (-) True AMCG00010857
AMCG00010851 mRNA downstream 69068 2687066 ~ 2689410 (-) True AMCG00010851
AMCG00010848 mRNA downstream 96620 2649261 ~ 2661858 (-) True AMCG00010848
AMCG00010849 mRNA downstream 120423 2630474 ~ 2638055 (-) True AMCG00010849
AMCG00010859 mRNA upstream 1262 2762526 ~ 2767269 (-) True AMCG00010859
AMCG00010867 mRNA upstream 182931 2944195 ~ 2945511 (-) True AMCG00010867
AMCG00010868 mRNA upstream 198011 2959275 ~ 2971015 (-) True AMCG00010868
AMCG00010873 mRNA upstream 215192 2976456 ~ 2984072 (-) True AMCG00010873
AMCG00010871 mRNA upstream 251329 3012593 ~ 3031562 (-) True AMCG00010871
TU127939 other downstream 1723604 1033921 ~ 1034874 (-) True AMCG00010806
TU127921 other downstream 1780351 975553 ~ 978127 (-) True G102434
TU127810 other downstream 2608649 145945 ~ 149829 (-) False AMCG00010794
TU128533 other upstream 418706 3179970 ~ 3182619 (-) True G102902
TU128662 other upstream 559549 3320813 ~ 3419176 (-) False G102990
TU128675 other upstream 564594 3325858 ~ 3327559 (-) False AMCG00010895
TU128666 other upstream 655104 3416368 ~ 3419176 (-) True G102990
TU128814 other upstream 1408529 4169793 ~ 4185974 (-) True G103112

Expression Profile