RNA id: TU128365


Basic Information

Item Value
RNA id TU128365
length 1331
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id G102785
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 2789470 ~ 2833183 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cacacacacacacacacaaacacacacacacacacacacacacacacacacacgtcagaTTGAACACGAAAACAAGccagtgtatataaaaaatagaaaacattttattggaaACCAActaaagtgcaataaatgttTACTCGCTTGCATCTCAGCGGAACACAAGCAATTGCAGTGAAACAGTAAGGATACAGTACAATACGACTAAGTCTGgagtaaaacaataacataaattatagtacaaaactgtacatgacctatttacattatttacacaaGGCACATTTGTCAAGAGTCAGATTCCATCgtttctttaaatatacagtaagcAATGTCATCAACAGTAATTCTCTAAAAAGCCACATTTTCAATGCGTTGTTTCGTTTCTTGAAGatggataatatatatatatatgtatatatatactttccTCTCAGGCATTCTCGAAGGCCACATGGGACACATTGCCACATCACAGGATGCAGAAGAGACTCAGGGCGATGCTCTCAGGGCATCGGTCTATTGAGAAATACAGCATTTCACAACGGCGGGGTTCTACGTCACAGTGCCTCAGGTTAAGTGCTATGGGGGGGTACGAGGGCAGTTGTGCAAATCAAACTAAGTTGGCTTCACTGCCTGTCTTCGCTGCCCGAGCAGGACTGGATCCGGGGACACCAGGTCTCACTCTGGGTCAGACATGATTATAACCATCGCAGGGGTTTGGGACACGTTTATCTCGGTTCAGTCTGTCTGTTCAGATCCGGTTCACGTACAGCTGCTGACAGAGACCCTGACTGCCCACCGCGGTGCTGAGCAGAGCCCTGGCACGGGGGGTCCGGACACCTGCCCTCGGGCACTGTCTGCCACACAGCACTCGACACGGTGACCTCCACGGGCCAGTCTCCTCAGCACCGGTGCCAACAGCAGGGCGGGAATGATCTGCGGCTCCAGTTCTGTACTGGGTCTGTCTCGGTGTGCGGGGGGCAGTGAATACATGTCAGTGCAGTGCAACCCTCTAacaaaacgagagagagagtggggtggtggggggctgtgtgtgtgtgtgtggaggggtgggggacCCTGATAAGAAAGCTATACATTTTCTCCTGTGAGGACCTTTTAGGAGAATATGGGACAATCCCAATTCAGTCAGGGCCACAGAGAGgtaaaatgaatgaagaatgGAAACAGGCCATTTATAGCaggcgttttgtttttgtaggtgTTCGGACAAACACCTATTTCAACAGAGGTGTGTTGCAACTGTAAACACATACCTCTAAAAATAGACGCTTCCTCTGTAAATGGAGTTGAGGATTGAAGTGAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128289 lncRNA downstream 114334 2674563 ~ 2675136 (-) True G102725
TU128213 lncRNA downstream 301053 2481897 ~ 2488417 (-) True AMCG00010843
TU128189 lncRNA downstream 351772 2386723 ~ 2437698 (-) True G102651
TU128166 lncRNA downstream 426360 2362880 ~ 2363110 (-) True G102639
TU128152 lncRNA downstream 472206 2316765 ~ 2317264 (-) True G102629
TU128418 lncRNA upstream 121577 2954760 ~ 2954975 (-) True G102816
TU128445 lncRNA upstream 157464 2990647 ~ 2991248 (-) True G102834
TU128510 lncRNA upstream 312081 3145264 ~ 3145687 (-) True G102887
TU128511 lncRNA upstream 326654 3159837 ~ 3160036 (-) True G102888
TU128512 lncRNA upstream 327400 3160583 ~ 3160897 (-) True G102889
AMCG00010859 mRNA downstream 22201 2762526 ~ 2767269 (-) True AMCG00010859
AMCG00010858 mRNA downstream 65670 2712527 ~ 2723800 (-) True AMCG00010858
AMCG00010857 mRNA downstream 82849 2694405 ~ 2706621 (-) True AMCG00010857
AMCG00010851 mRNA downstream 100060 2687066 ~ 2689410 (-) True AMCG00010851
AMCG00010848 mRNA downstream 127612 2649261 ~ 2661858 (-) True AMCG00010848
AMCG00010867 mRNA upstream 111012 2944195 ~ 2945511 (-) True AMCG00010867
AMCG00010868 mRNA upstream 126092 2959275 ~ 2971015 (-) True AMCG00010868
AMCG00010873 mRNA upstream 143273 2976456 ~ 2984072 (-) True AMCG00010873
AMCG00010871 mRNA upstream 179410 3012593 ~ 3031562 (-) True AMCG00010871
AMCG00010872 mRNA upstream 201164 3034347 ~ 3044090 (-) True AMCG00010872
TU128333 other downstream 11447 2739816 ~ 2778023 (-) True G102762
TU128350 other downstream 28206 2758478 ~ 2761264 (-) True G102774
TU127939 other downstream 1754596 1033921 ~ 1034874 (-) True AMCG00010806
TU127921 other downstream 1811343 975553 ~ 978127 (-) True G102434
TU127810 other downstream 2639641 145945 ~ 149829 (-) False AMCG00010794
TU128533 other upstream 346787 3179970 ~ 3182619 (-) True G102902
TU128662 other upstream 487630 3320813 ~ 3419176 (-) False G102990
TU128675 other upstream 492675 3325858 ~ 3327559 (-) False AMCG00010895
TU128666 other upstream 583185 3416368 ~ 3419176 (-) True G102990
TU128814 other upstream 1336610 4169793 ~ 4185974 (-) True G103112

Expression Profile