RNA id: TU128445


Basic Information

Item Value
RNA id TU128445
length 602
lncRNA type inter_gene
GC content 0.62
exon number 1
gene id G102834
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 2990647 ~ 2991248 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGGAACCCGAGCTGACAGATGTGCAGCGCCCGCAGCCCCCAGCGCCGCCCGCCCCCCAGCAGCAGGCTCTCGGTGGCCGTCTGCGCCGTCTGCGCGTCCAGCTCCCGGTCGTACTTGAACCAGAACCAGCTGAACGTCTGCATCAGGACCGAGGAGACCACGATGAAGCCCACCACCAGCCCGAACCAGCAGTAGTCCCCCTGGAGGTAGAAGTCCCTGGCCACCCACAGGTCGGCTCCCAGGTCGAACAGGAAAGTGCCGACCCCGACGACCGTGAACAAGAAGTCCAGCCACGAGTACTTGCAGGGCATGGCGCACTCCATAACAGTGCATGTGTCTGCGCTCTTCACTGGGTTATTTCTCCCAGGGCCCAGCAACCCCCCGTCCACGGCATGCAGACGAGCGAGCAAGTGAAGTAGCGCGACTGCGGGGTGTCCGTGTGCAAACTTCAGCCGTGCAACTGCGAGTCGAGCCGAGATCTGACTTTATATGCCTGGGGTGGGCATGTTTACGTGCAGGAGTGACAGGAGCTGCCCCGGCTCTTGTCTATGGCCGTTTCGTTTTGAAAGTCTAACTCTGCCCCGTTTGCAGAAGCAGGCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128418 lncRNA downstream 35672 2954760 ~ 2954975 (-) True G102816
TU128365 lncRNA downstream 157464 2789470 ~ 2833183 (-) True G102785
TU128289 lncRNA downstream 315511 2674563 ~ 2675136 (-) True G102725
TU128213 lncRNA downstream 502230 2481897 ~ 2488417 (-) True AMCG00010843
TU128189 lncRNA downstream 552949 2386723 ~ 2437698 (-) True G102651
TU128510 lncRNA upstream 154016 3145264 ~ 3145687 (-) True G102887
TU128511 lncRNA upstream 168589 3159837 ~ 3160036 (-) True G102888
TU128512 lncRNA upstream 169335 3160583 ~ 3160897 (-) True G102889
TU128513 lncRNA upstream 169849 3161097 ~ 3161512 (-) True G102890
TU128569 lncRNA upstream 277294 3268542 ~ 3269769 (-) True G102920
AMCG00010873 mRNA downstream 6575 2976456 ~ 2984072 (-) True AMCG00010873
AMCG00010868 mRNA downstream 19632 2959275 ~ 2971015 (-) True AMCG00010868
AMCG00010867 mRNA downstream 45136 2944195 ~ 2945511 (-) True AMCG00010867
AMCG00010859 mRNA downstream 223378 2762526 ~ 2767269 (-) True AMCG00010859
AMCG00010858 mRNA downstream 266847 2712527 ~ 2723800 (-) True AMCG00010858
AMCG00010871 mRNA upstream 21345 3012593 ~ 3031562 (-) True AMCG00010871
AMCG00010872 mRNA upstream 43099 3034347 ~ 3044090 (-) True AMCG00010872
AMCG00010877 mRNA upstream 112726 3103974 ~ 3107204 (-) True AMCG00010877
AMCG00010878 mRNA upstream 137004 3128252 ~ 3141209 (-) True AMCG00010878
AMCG00010880 mRNA upstream 150159 3141407 ~ 3143759 (-) True AMCG00010880
TU128333 other downstream 212624 2739816 ~ 2778023 (-) True G102762
TU128350 other downstream 229383 2758478 ~ 2761264 (-) True G102774
TU127939 other downstream 1955773 1033921 ~ 1034874 (-) True AMCG00010806
TU127921 other downstream 2012520 975553 ~ 978127 (-) True G102434
TU127810 other downstream 2840818 145945 ~ 149829 (-) False AMCG00010794
TU128533 other upstream 188722 3179970 ~ 3182619 (-) True G102902
TU128662 other upstream 329565 3320813 ~ 3419176 (-) False G102990
TU128675 other upstream 334610 3325858 ~ 3327559 (-) False AMCG00010895
TU128666 other upstream 425120 3416368 ~ 3419176 (-) True G102990
TU128814 other upstream 1178545 4169793 ~ 4185974 (-) True G103112

Expression Profile