RNA id: TU128476


Basic Information

Item Value
RNA id TU128476
length 2018
lncRNA type sense_over
GC content 0.45
exon number 2
gene id G102859
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 3093934 ~ 3130264 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTTTTCCAATAAAACTGACTTCtttattgcattacaattgACTTAttacaaaaactattttaacaaaAAGTAACCCCGGGTAATGTTTCAACACCATTCTCATTTTGAACGGTTAGTACAGCTGCTACACGCAAGAGGAACCTGCTTGGTGACACGCCAACTGAAACCATCAGACCTCTGCGACTATCACTTGGCGGAAACCCCTCAGCATGTGCCCGGGACCGGCCTGTTTATGGGCACCTGTTGTGTTTAGCGTAAACCATTGTCTTCCACTAAGGGCAGAGCAGGGAATTTGCTTCCCAGAATCAACAGCAAAGACATCAGACGTTGTCCAGCCCCCAGAAGGCTTTCAGACCAGGCCTTCATAAATGGCTGCAACCTGGAAAACACTCCGATATGTTCTGCCCTCTGTGGGCAGGCAGTGGTACTACGCACAAACACCCAGAACTACAGCTCATCCTTCCAGCTTCAACATATTGCACACCTCAACCGAGGTTAAGAgaagattaaacaaaattcaGCACAATAGATATAAAAAAAGAGGTCAATATTCTTACGCAGTGCAGTCTGCTTTTTGGCATAACGGATTGTTGGCTTATTTCTTTCCTTCTAGGAGTAAACAGGAGGAGTAAACAGAAACTCTACAGTACTGCTctagtgacaaaaaaaaaacagaacagccCAAACCAAGCTACTGCAAGGAAAATACCTGAATTCTGCACCATTGCTGTGAGTGTCTCCCCCTCGGTGTGTTTAGAGACGTTCTCGAGAGGAAACACGCTGTCCTACTCTCCCATCtcggcgcacacacacagatcaaatCACCGCGTCGGCCAAAGTGTTTCAGTGCACTGGTTCAGTTCAGAAGCTGGGTTTCGATTTGGGGACTGTTTTCAGTTCAAGAGGGCTGGATAAAATCTCAGCTCTGACCTACATGTGAAGAGCAAACTACAACCCTATACCTGACAGCGGTTAATAAAGCGGTTGACAAATAAAGTCACCACTGAGAACAggtctgtagttttctgttcagagctgggtcaaacttttgattgaATCCCAATCCCTATTAAACTGCTACGAAGGAAATGGTTAAGATCAGGAATCCACTATAGGTGCTTATAACCAATGCTGTGTTTGAAATTTTACAGAAATTTTTTAGAATATTATTTAACATTCAGAATTTTCAAACTAACGTGTCTTTAGGTTTACTCTTTCACATTAACCCTCTACAGCTGTTCCTCgcaatgaataataaaatgtacagagtGGTTATAATCACTTATTGCAACCTATCCATCAGCACAAGTGTTTCTCGCCAATAGAAACTTAAAAGGCAGCTACTTGACAATAGCCTGCTTCCAGTATACGGTTGGATTTGTGTCACACATTCAGTTTGCATAGAGAACAGACTGAGCAGCGAGAGGATTGGAGAGCCCGGCTTAGGAAGAGACCCCCAGCCAGGAAGGCCATCGGTGAGAGAAGTCTGTGATCCTTCATGTGCACAGCTAAACCGAGGAGTGATTTCagagaagaaaaggagaaaatgcaaaaacagcTGCCCAGATGTGAAACAGCACCCCCCAGTGTTACATGTAAACGTTTGCCGATCAGGTCAGACACCGATGGGCTCCGTGGCGTGCGtgtccctctctcgctctcctctgtctctctttacTGCTCAAGGTACTCTTTAGCCTTTTCCATTCCCTCCTTGAGGAAGCGGATGTAGGTGGCAGTGGAGGGGTCCTCGAACCCCTCCGTGAAGCTGAACATGGTCCCCTCGGGCTCCTCCGGCTTCATTGACGTCTCGTCCAGGAAGTAGTTTGCATTGATGTGGTGGACCTGCAGGGCAGAGGGACAAAACCAGCTCAGACAAGCTTTCAAACACTCACAGAATGATCTTCATTCAACGCCTAAATGAAATCCAGCTAAAAttacaaaaccatttaaaacacacacacaccagtgtacTGCTGGATGAGGCCTCCCCAAGGTGTTTCCATGTTTTGACCAGC

Function

GO: NA

KEGG:

id description
ko00190 Oxidative phosphorylation

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128456 lncRNA upstream 66537 3027068 ~ 3027397 (+) True G102843
TU128320 lncRNA upstream 316015 2776464 ~ 2777919 (+) False AMCG00010856
TU128319 lncRNA upstream 323461 2769140 ~ 2770473 (+) False AMCG00010856
TU128248 lncRNA upstream 433076 2623606 ~ 2660858 (+) True G102693
TU128193 lncRNA upstream 644053 2449200 ~ 2449881 (+) True G102655
TU128613 lncRNA downstream 302551 3432815 ~ 3433147 (+) True G102944
TU128615 lncRNA downstream 304655 3434919 ~ 3457657 (+) True G102945
TU128630 lncRNA downstream 329598 3459862 ~ 3462503 (+) True G102959
TU128721 lncRNA downstream 462404 3592668 ~ 3593407 (+) True G103035
TU128775 lncRNA downstream 919674 4049938 ~ 4083586 (+) False G103078
AMCG00010870 mRNA upstream 85643 3004761 ~ 3008291 (+) True AMCG00010870
AMCG00010869 mRNA upstream 94831 2990631 ~ 2999103 (+) True AMCG00010869
AMCG00010863 mRNA upstream 104253 2984975 ~ 2989681 (+) True AMCG00010863
AMCG00010865 mRNA upstream 181883 2902803 ~ 2912051 (+) True AMCG00010865
AMCG00010866 mRNA upstream 198610 2893018 ~ 2895324 (+) True AMCG00010866
AMCG00010875 mRNA downstream 14850 3145114 ~ 3167623 (+) True AMCG00010875
AMCG00010874 mRNA downstream 42558 3172822 ~ 3179031 (+) True AMCG00010874
AMCG00010882 mRNA downstream 49696 3179960 ~ 3182656 (+) True AMCG00010882
AMCG00010881 mRNA downstream 52855 3183119 ~ 3188870 (+) True AMCG00010881
AMCG00010885 mRNA downstream 147563 3277827 ~ 3283330 (+) True AMCG00010885
TU128314 other upstream 332425 2756302 ~ 2761509 (+) False AMCG00010854
TU128108 other upstream 1020692 2070677 ~ 2073242 (+) False AMCG00010834
TU128591 other downstream 179474 3309738 ~ 3310953 (+) False AMCG00010884
TU128574 other downstream 201320 3331584 ~ 3383867 (+) False G102921
TU128590 other downstream 201455 3331719 ~ 3335977 (+) False AMCG00010886
TU128578 other downstream 233003 3363267 ~ 3398506 (+) True G102921
TU128579 other downstream 240789 3371053 ~ 3398506 (+) False G102921

Expression Profile