RNA id: TU128510


Basic Information

Item Value
RNA id TU128510
length 424
lncRNA type inter_gene
GC content 0.54
exon number 1
gene id G102887
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 3145264 ~ 3145687 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGATCATCCATTTACACTGCCTATCGCGATACAATACAGATGTTTGTACTCGGTGCTTAAACGTTTACAGTTCTAACCCCCCAACGGCACTGGCTgtcattgcaaaaaaaaaaaaaaactaaagccaTGCAGCCCCCCTGCTTCCTGCTCTGTCCCTCTCTCGGCCCTGCAGCActtttccctgtgtgtgtttgcaacaACATCCCGTTTTTTTCTCTCGGTTTGTTGTTACCTGGCAGAAGCGCATGCAGTAGTCCTCGGACGCGGCTACCGAGACCTCCTGCCGCCGGAGATCGGCCTCCAGCCCGCCGAAGGTGTCCAGTAAACTGTCCATTGCGATTAGAGGTTTCTCCGCGGTGTTTTGCGGCTGATCTCGCCACTCAGGCTTCGTTTCTCCCTCCCCGTCCGCCATCTTCCCTCTCGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128445 lncRNA downstream 154016 2990647 ~ 2991248 (-) True G102834
TU128418 lncRNA downstream 190289 2954760 ~ 2954975 (-) True G102816
TU128365 lncRNA downstream 312081 2789470 ~ 2833183 (-) True G102785
TU128289 lncRNA downstream 470128 2674563 ~ 2675136 (-) True G102725
TU128213 lncRNA downstream 656847 2481897 ~ 2488417 (-) True AMCG00010843
TU128511 lncRNA upstream 14150 3159837 ~ 3160036 (-) True G102888
TU128512 lncRNA upstream 14896 3160583 ~ 3160897 (-) True G102889
TU128513 lncRNA upstream 15410 3161097 ~ 3161512 (-) True G102890
TU128569 lncRNA upstream 122855 3268542 ~ 3269769 (-) True G102920
TU128685 lncRNA upstream 275201 3420888 ~ 3424769 (-) True G103006
AMCG00010880 mRNA downstream 1505 3141407 ~ 3143759 (-) True AMCG00010880
AMCG00010878 mRNA downstream 4055 3128252 ~ 3141209 (-) True AMCG00010878
AMCG00010877 mRNA downstream 38060 3103974 ~ 3107204 (-) True AMCG00010877
AMCG00010872 mRNA downstream 101174 3034347 ~ 3044090 (-) True AMCG00010872
AMCG00010871 mRNA downstream 113702 3012593 ~ 3031562 (-) True AMCG00010871
AMCG00010879 mRNA upstream 22738 3168425 ~ 3171989 (-) True AMCG00010879
AMCG00010883 mRNA upstream 45134 3190821 ~ 3209564 (-) True AMCG00010883
AMCG00010891 mRNA upstream 113256 3258943 ~ 3263464 (-) True AMCG00010891
AMCG00010895 mRNA upstream 175689 3321376 ~ 3327520 (-) True AMCG00010895
AMCG00010896 mRNA upstream 271462 3417149 ~ 3418378 (-) True AMCG00010896
TU128333 other downstream 367241 2739816 ~ 2778023 (-) True G102762
TU128350 other downstream 384000 2758478 ~ 2761264 (-) True G102774
TU127939 other downstream 2110390 1033921 ~ 1034874 (-) True AMCG00010806
TU127921 other downstream 2167137 975553 ~ 978127 (-) True G102434
TU127810 other downstream 2995435 145945 ~ 149829 (-) False AMCG00010794
TU128533 other upstream 34283 3179970 ~ 3182619 (-) True G102902
TU128662 other upstream 175126 3320813 ~ 3419176 (-) False G102990
TU128675 other upstream 180171 3325858 ~ 3327559 (-) False AMCG00010895
TU128666 other upstream 270681 3416368 ~ 3419176 (-) True G102990
TU128814 other upstream 1024106 4169793 ~ 4185974 (-) True G103112

Expression Profile