RNA id: TU128578



Basic Information


Item Value
RNA id TU128578
length 991
RNA type TUCP
GC content 0.50
exon number 4
gene id G102921
representative True

Chromosome Information


Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 3331584 ~ 3398506 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GGCGTTTTCTCCGGTACCGGAGTTTTTCCGTTTGTGTTGCGGTCGATGCTGTGGATCACGTTTAGTTGCCCCTCGGAGGCCCCACTTTAGTCTTTGGGGGGTCCCTTCCAGcttggggccccaggcaattgcctggttTGCCTACCCCGTTGCAACATCTCTGTATAAAAGCAGGCTCACGAGTATAGGAGTAGCTATAGGCAAAGAGGAACTCTCCAAGGAAAGATGTCTGTGATCACAGTGCTGCTGGCGAACACTGTCACAGTGTCTTCATTTTAACAATAGCCTTCTTTTCAAACCTTCCAAGTTATCTGTGTACAGGTTCCCCCCCGGCCCGGCTGCCTGGCCTGTGATCGGGAACCTCAATATTCTGGACATGAAGAAACCTCAGGAAACTTTATGTCAGCTGTACAACATCTCCCCTTTCCTGGGGtcctttcttgtggatttcAAGTAAGTGTATAGCAACACATTAGAGAATCAGACGTTCCTCTCAAACTACAACCAAGAGCGCAAAGACATTGTGGATAGAAATGACCTGAGGAGCTTCATTGATGCTTTCATTGCCAAACAGCAGGAGGAGgaaataaaaaacccaaatacttatttcaatGAGGTGAACATGGTGTCCACTGCAGGGAACCTTTTTGGTGCGGGAACAGAAACTACATCAACCACTCTGCGCTGGGGGCTTCTGCTGCTGATGAAGTACCCTCATATACAGGAGAAGGTGCATGCTGAGATCCAAGCTGTGATTGGGAAAGAGCGCCCCCCAAGGGTGGAGGACCGCAAGGACATGCCCTACACTGATGCAGTACTACATGAGATCCAGAGGTTTGCTAATGTGGTCCCCATGAATGTGCTACATCAGACCAAATCAGACATTGACTTCAAGGGCTACAGAATCCCCAAGGTGAGCCTCCCCGACACAGCAGTCCACCTCACACAGACAGCGCATACTGTGACTGACTCTCTGGCCAACGCAAATCTC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU128476 lncRNA upstream 233003 3093934 ~ 3130264 (+) True G102859
TU128478 lncRNA upstream 259625 3099921 ~ 3103642 (+) True G102860
TU128456 lncRNA upstream 335870 3027068 ~ 3027397 (+) True G102843
TU128320 lncRNA upstream 585348 2776464 ~ 2777919 (+) False AMCG00010856
TU128319 lncRNA upstream 592794 2769140 ~ 2770473 (+) False AMCG00010856
TU128613 lncRNA downstream 34309 3432815 ~ 3433147 (+) True G102944
TU128615 lncRNA downstream 36413 3434919 ~ 3457657 (+) True G102945
TU128630 lncRNA downstream 61356 3459862 ~ 3462503 (+) True G102959
TU128721 lncRNA downstream 194162 3592668 ~ 3593407 (+) True G103035
TU128775 lncRNA downstream 651432 4049938 ~ 4083586 (+) False G103078
AMCG00010886 mRNA upstream 24851 3331761 ~ 3338416 (+) True AMCG00010886
AMCG00010884 mRNA upstream 52316 3301956 ~ 3310951 (+) True AMCG00010884
AMCG00010885 mRNA upstream 79937 3277827 ~ 3283330 (+) True AMCG00010885
AMCG00010881 mRNA upstream 174397 3183119 ~ 3188870 (+) True AMCG00010881
AMCG00010882 mRNA upstream 180611 3179960 ~ 3182656 (+) True AMCG00010882
AMCG00010888 mRNA downstream 22576 3421082 ~ 3427031 (+) True AMCG00010888
AMCG00010887 mRNA downstream 38815 3437321 ~ 3439509 (+) True AMCG00010887
AMCG00010897 mRNA downstream 150959 3549465 ~ 3550451 (+) True AMCG00010897
AMCG00010903 mRNA downstream 271949 3670455 ~ 3677090 (+) True AMCG00010903
AMCG00010905 mRNA downstream 432808 3831314 ~ 3835049 (+) True AMCG00010905
TU128590 other upstream 27290 3331719 ~ 3335977 (+) False AMCG00010886
TU128591 other upstream 52314 3309738 ~ 3310953 (+) False AMCG00010884
TU128314 other upstream 601758 2756302 ~ 2761509 (+) False AMCG00010854
TU128109 other upstream 1290025 2070677 ~ 2073242 (+) False AMCG00010834
TU128592 other downstream 27993 3426499 ~ 3428429 (+) False AMCG00010888
TU128618 other downstream 38112 3436618 ~ 3443534 (+) True G102947
TU128716 other downstream 178729 3577235 ~ 3580277 (+) True G103030
TU128774 other downstream 651432 4049938 ~ 4083586 (+) True G103078
TU128904 other downstream 1239926 4638432 ~ 4642358 (+) False AMCG00010922

Expression Profile