RNA id: TU128613


Basic Information

Item Value
RNA id TU128613
length 333
lncRNA type inter_gene
GC content 0.30
exon number 1
gene id G102944
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 3432815 ~ 3433147 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tgagactgatatatatataacgagaagttacctgacataaatactaacctgcgttatttaattatttaatgtgtgactaacaatactaatgagagactcaccttcgtcttactaaccggtattgtagtcaatgtgtttataaccttttttgtttaacgatttgtgtgttatcatatgcgatcccatggtctttgatttggtcacggaagtgatttgtctttgatttgttgatctagagttgaattttaattagtttttcccttttgtataattagtgtagtgctacatttagtctttgtttttgaataaatttgacaatttatatctttggaa

Function

GO: NA

KEGG:

id description
ko04972 Pancreatic secretion
ko04974 Protein digestion and absorption

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128476 lncRNA upstream 302551 3093934 ~ 3130264 (+) True G102859
TU128478 lncRNA upstream 329173 3099921 ~ 3103642 (+) True G102860
TU128456 lncRNA upstream 405418 3027068 ~ 3027397 (+) True G102843
TU128320 lncRNA upstream 654896 2776464 ~ 2777919 (+) False AMCG00010856
TU128319 lncRNA upstream 662342 2769140 ~ 2770473 (+) False AMCG00010856
TU128615 lncRNA downstream 1772 3434919 ~ 3457657 (+) True G102945
TU128630 lncRNA downstream 26715 3459862 ~ 3462503 (+) True G102959
TU128721 lncRNA downstream 159521 3592668 ~ 3593407 (+) True G103035
TU128775 lncRNA downstream 616791 4049938 ~ 4083586 (+) False G103078
TU128841 lncRNA downstream 854876 4288023 ~ 4290680 (+) True G103137
AMCG00010888 mRNA upstream 5784 3421082 ~ 3427031 (+) True AMCG00010888
AMCG00010890 mRNA upstream 34923 3388255 ~ 3397892 (+) True AMCG00010890
AMCG00010889 mRNA upstream 46458 3349756 ~ 3386357 (+) True AMCG00010889
AMCG00010886 mRNA upstream 94399 3331761 ~ 3338416 (+) True AMCG00010886
AMCG00010884 mRNA upstream 121864 3301956 ~ 3310951 (+) True AMCG00010884
AMCG00010887 mRNA downstream 4174 3437321 ~ 3439509 (+) True AMCG00010887
AMCG00010897 mRNA downstream 116318 3549465 ~ 3550451 (+) True AMCG00010897
AMCG00010903 mRNA downstream 237308 3670455 ~ 3677090 (+) True AMCG00010903
AMCG00010905 mRNA downstream 398167 3831314 ~ 3835049 (+) True AMCG00010905
AMCG00010907 mRNA downstream 456816 3889963 ~ 3893566 (+) True AMCG00010907
TU128592 other upstream 4386 3426499 ~ 3428429 (+) False AMCG00010888
TU128578 other upstream 34309 3363267 ~ 3398506 (+) True G102921
TU128579 other upstream 34309 3371053 ~ 3398506 (+) False G102921
TU128580 other upstream 34309 3371053 ~ 3398506 (+) False G102921
TU128574 other upstream 48948 3331584 ~ 3383867 (+) False G102921
TU128618 other downstream 3471 3436618 ~ 3443534 (+) True G102947
TU128716 other downstream 144088 3577235 ~ 3580277 (+) True G103030
TU128774 other downstream 616791 4049938 ~ 4083586 (+) True G103078
TU128904 other downstream 1205285 4638432 ~ 4642358 (+) False AMCG00010922
TU129373 other downstream 3208836 6641983 ~ 6642628 (+) True G103542

Expression Profile