RNA id: TU128615


Basic Information

Item Value
RNA id TU128615
length 2504
lncRNA type sense_over
GC content 0.43
exon number 3
gene id G102945
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 3434919 ~ 3457657 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tttttttttttttttttATTTGTTTCCCCAATTAAAAATggtctttaatttaaaaaaaaagacattcccAACATCCTCATGAATGTGTTCAGGCTGTTTCATCACTGTTCTGCATTTTCAAGCACTCACTTAGACcatctgttaaaaaacaaacttctaGGACAGGTGTACAGATCGAGTATAACAGTGAAAGGTTGAGTATAATACAGTGAATATTTCGGAACCATTTCCATCAACAATCTGCCATTGAACCAATACAATAAGATATTAAAAGAGTGCAGAGGGGGAAGCACAATTCTGGACATCCATTGTTCTCAGGGTGGGGACAGCGAATCCTTTTCACTCCGATGCATTTGCGGATGTGTCCAGAACAAACCTCACACAGGCTTAGCTGATGCAAATGTCAGGATTGGCTTACAGCATTGCCCATCGTTCTCATTTCATGTCAAACAGTACATACCCCTCCTACGACACACGTCCTGCCCAGTTCACTACGCTTACTTAAAACCTGTTTATATTTCTAGTCATAATAAGGAATTAAATGACAAATGGCCTTGAATGAAAGCTGAATGAAAGGAAAAGTCATTTGCAAAACATTCCACAGTTGCAGAATACAGAGAAAAATGTTTATGCAATGGAAGTAGTGTGCGATTTGGAAACTGCTAAATGCATACAGCTTTCAGAAGTCCTCTCACCAAAGTTGAAGGAACTGCTATGAAATGAAATATCAAGGAAATGATGATTTAACAAATTACCACCCCAACCTTTTGAGCTCAGTAGCATGCATCCCTTGCCACATGAAGAGATGTAATCACAGAGCACTGAACCACTGCACCCGGATTGTTATGTtaccagtaaaaacaaaacaacttagGGTTGATGAGAGAGCTTCATCTCAGTTCAAGTCTGCATTAACAATGGAAAGgatgagtgttttttttaggtttttatgCCCACGTTTCTGCCGCTAAACTAAGATAGAAACGATAAATATCCCATCTCAGTGAAGAAAGAAATAAGAGGGATGCTGGCACACAGGCTAGTACTTTTTAGACACGCTAaagaatctgaaaaataaaataataaaataattcagagaGTCACTGTAGGCCACGTCCCCCATCgttctaaaaacaaacagagaaaatgTGTGGATTGAGCTCCCTCCTTTGGTGGGAATCAGGCCTTGCGCTTCCTTCACCCACACGTGGAGCTCCCCAGTCAAGGGCATGCCGTTACCTGTAAGGTAGAAACAGACCTACCGATCAAACCTTTGTTTCAATAGGCCACCCTGGATAAAACCATCTCATGAAGAGGCGAGTGACCAGCCTACCATCTGATCCGGCGGGAACAAACTTCAAAGAAAGGATGATCGTTCCTCTGGATCCGAGAGTGTCCTGGGACATCTGGATCTGCGAGGTTGGAGGTATGACATCCATATAAATTCTCACACAATCCACAGACTAATGAGAATGCTACCATTACCAACAGGCACCTTCTGTAGGTGTCCTCAAATCTGAAGTGCATACGAGCAGGACTCACCCTGGGCACCAGGTCATGCCAGGCAGGCTGGGTGTGGCTCCAGTCCCACGTCGCCATGGCCACCTCCACCTCTCCCAGAAAGATGTTGCGGCGCAGGGGGTCGTGGTGCCACACGGACAGGTTCAGGGTGCGGTCCTTCAGCTCCAGCATCTTTATCTTGTACTGCGGAGTGACAAAGTGAAGGACGAGGGGCAACAGGGTAGGTGGGGGTTGTGCGTCatagtgtgtttttattgatgtCGGGCAAAACGTTTAGACTGGGAAAGACTACTGTTTCAGCTACACAAACAGGAGGACACCATGTCAGATCCCACTGGAGTGAAATGCAGGAAATTCAGCTGGTTGGACTGTGGGTTAAAATTTATGCGAGACCGATGTACAGAAATGCCGGGGACTTACTTTGAGGGTTTCATCAAATACAGGATTGATCGTCTTCTTCTTCACGGAGGTCTTCTTCTTACTCTGAGAGGATTTATCAGGGAGCAGGTAAGTCTTCACGTACCtaaaacacacaccaaacaaaaacaaaacgtctTAGCTTTTCAACTAGAAACAAAAAGGGGATTTATAAAGGATTCACGGACAAACATGCTCACAGTTCATTTAAAAGGTCAATGCCCTGTCCCCAGTTGAATTATTAATGCATGGGTTGCTCCAACaacacaatttacttttaaatgagagtATTTTGTAACAGTGATCTGAGCTGAAATGTTGCAAGCTTAAAGATAACCATATGCGAGTCATATTgctgttggtggtggtggtggtgggggaggatggcaataatgcaaacaaatgtgaaaaagatGGCAATGGAAATGCTAAAGGAACAGAAGGTTTGTAGATCTGTGCAAAaatcttaaacaaacaaacattcccacgtttttatttataagtagtacAGTGGCCTCGAACtctaaattaaactgcagtatGGTAGAGGTTCAGAGGTAGGTCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128613 lncRNA upstream 1772 3432815 ~ 3433147 (+) True G102944
TU128476 lncRNA upstream 304655 3093934 ~ 3130264 (+) True G102859
TU128478 lncRNA upstream 331277 3099921 ~ 3103642 (+) True G102860
TU128456 lncRNA upstream 407522 3027068 ~ 3027397 (+) True G102843
TU128320 lncRNA upstream 657000 2776464 ~ 2777919 (+) False AMCG00010856
TU128630 lncRNA downstream 2205 3459862 ~ 3462503 (+) True G102959
TU128721 lncRNA downstream 135011 3592668 ~ 3593407 (+) True G103035
TU128775 lncRNA downstream 592281 4049938 ~ 4083586 (+) False G103078
TU128841 lncRNA downstream 830366 4288023 ~ 4290680 (+) True G103137
TU128854 lncRNA downstream 980220 4437877 ~ 4438136 (+) True G103150
AMCG00010888 mRNA upstream 7888 3421082 ~ 3427031 (+) True AMCG00010888
AMCG00010890 mRNA upstream 37027 3388255 ~ 3397892 (+) True AMCG00010890
AMCG00010889 mRNA upstream 48562 3349756 ~ 3386357 (+) True AMCG00010889
AMCG00010886 mRNA upstream 96503 3331761 ~ 3338416 (+) True AMCG00010886
AMCG00010884 mRNA upstream 123968 3301956 ~ 3310951 (+) True AMCG00010884
AMCG00010897 mRNA downstream 91808 3549465 ~ 3550451 (+) True AMCG00010897
AMCG00010903 mRNA downstream 212798 3670455 ~ 3677090 (+) True AMCG00010903
AMCG00010905 mRNA downstream 373657 3831314 ~ 3835049 (+) True AMCG00010905
AMCG00010907 mRNA downstream 432306 3889963 ~ 3893566 (+) True AMCG00010907
AMCG00010906 mRNA downstream 458632 3916289 ~ 3946921 (+) True AMCG00010906
TU128592 other upstream 6490 3426499 ~ 3428429 (+) False AMCG00010888
TU128578 other upstream 36413 3363267 ~ 3398506 (+) True G102921
TU128579 other upstream 36413 3371053 ~ 3398506 (+) False G102921
TU128580 other upstream 36413 3371053 ~ 3398506 (+) False G102921
TU128590 other upstream 98942 3331719 ~ 3335977 (+) False AMCG00010886
TU128716 other downstream 119578 3577235 ~ 3580277 (+) True G103030
TU128774 other downstream 592281 4049938 ~ 4083586 (+) True G103078
TU128904 other downstream 1180775 4638432 ~ 4642358 (+) False AMCG00010922
TU129373 other downstream 3184326 6641983 ~ 6642628 (+) True G103542
TU129402 other downstream 3460109 6917766 ~ 6920931 (+) False AMCG00010990

Expression Profile