RNA id: TU128630


Basic Information

Item Value
RNA id TU128630
length 2068
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G102959
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 3459862 ~ 3462503 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCTGGAGTGCCATTGGGGATCTCTGGAGCCACACTGATCTGGAAAATAGAAGCAATATGACAGttttataacaataacaatgttatTAGTGTTATTAGTCCCACTTCAGCTAACATGCAAGAACTACTAACTTAAAACTCAAATTCAAGTCACCTATTGGAATTATGATCAAAGTTTCATCTGGCCTGGGCCTAACAGGGATCCAGGTAGATGTTGGTTATTATGACCAGGCCCAACCAATTCTGATGAGATAAGGTTAGCAGATCTTACGCTTTGTATTCTCTCTGCGCtctgtgttaattaaatgttacttTAGCACCCTGATCATAAGGATGATAGTGTATTTTTGCCTTGGTAgcttatatattaaacattaataaccTCAACAGAAGAATGTTTATTGACTTTCTCTTCAGAAGGGGTTTGCTTCACCTTGTCCTTGGCACTGAAAGAAAAGTGCAACGGAGGTTAAAATTAGAGACGAAGGAGTCGGGGAAAAGCACAGGACCTCACATTTCCATCTCAGCTTTGGTTTTGAGTGTCAGTCTTTATCCTCCCCCTTCTGATCTGACttattgcattcattttaaaagagagTTTGGGGGTGGCAGTTTAAACTATAGAAGACATCCGCATCTTGAAAGCACCGTACATCTGAGAATAATCAGGTAAggggttaaataaataaaaaataaaaaaagggtgGGACTTCTATTGTGCACTTAACTGAACTCTTAACGGCAAAGTGTGAAAGTTTATGATTGCTGTGGGTGTTGTGTGTGACTTGACTGTGATAACTGCCTTTCTCACGAGGGAGTGTGGAAGTTAACAGGTGAAGGACATCTCATGCAGTTTGGGCTCCAACTACACAAACAgcgaaaaatatatacaattgtatCTCTTATACAACAACCTATTAACTTACTATAAATCACACGTATGgattaaacacatgcatatctttacagtgaatttttattttactttcattaaatgtatcaaaCGCCTTTCTCTCagtgtaaaaatgttttggtccaggatccactgtaactgacctacagtagccgatctgtgttgttttcatgctggttaaacataacaaaactattaaaatcaatgtacatcctgtgaaactgcCCCCACTCACATGAAGTGTCCAGAAACATCACTGGTTACTGAAGAATTTAACAATCCTGATCATTCTAAGAATGAGGTGTAGAAAtgttggaaatgctgctctgtgattggctgatttatcatatgtgatttatactAGTATATTCAAAGGTCATGACTAAACAATGTTGGAAAACCGCATCATCTTAACAAAGCTTCTGTTGTGCCAGTTTTAAAACTCCCCTACTTAAGCCAATCTGCTATgccacagaaaaacaagcagTTACATGTGTGTAGTGAGTTTTGCTGTAAGACTAAAGAGATTAAATAACTTATTGTGagttaagaaaaaatatgaataaatatgaattcatGCAGTGGTAGGGCACAGGCTATGTAGTTTAAGCTTTAAAAGCCTTCTAACAAACATCACAGTGGTTAATTAAgcatatatttcatatattttaaaaagcataagGGGACATTCTAAAGACTGCCTGCCAGATGTTCCATACATCTGGCACAAAGTGGCATTTATGGGTGCAATTTTCATCTACTGGCTGTTTCAGCTAACGAGGCGCCCgtctgttatttatgtattataggTCTCAATGGTTAACTTCTTGGTTAATTTACAACTAATAAATGAAgcgaagaaaataaattaacagaatgACGTACAGCTGGGTTTTTTCCTGCGTCTCCGTGCCAGCCTGCCCTGGTGTGGCCAGGGTGGGAACCCCGCCGTTGGCCACTGCCAGGGTCTCGGGGATGCTGTCGGAGAATGGGTCCCTCCCCTTCTCCGCTTGGGCTTCTTCTTGCGGCGGATGGACGCACGGACGATATCGGAGCCATACTTCTTGTCCCGGTGGCGTTTGGACCGGACCTCATTGAACCACTCCCCGGTGAGGCTCTTCAGCGTCCAGGGGTCAGACACCGTGTGACGCAGCTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128615 lncRNA upstream 2205 3434919 ~ 3457657 (+) True G102945
TU128613 lncRNA upstream 26715 3432815 ~ 3433147 (+) True G102944
TU128476 lncRNA upstream 329598 3093934 ~ 3130264 (+) True G102859
TU128478 lncRNA upstream 356220 3099921 ~ 3103642 (+) True G102860
TU128456 lncRNA upstream 432465 3027068 ~ 3027397 (+) True G102843
TU128721 lncRNA downstream 130165 3592668 ~ 3593407 (+) True G103035
TU128775 lncRNA downstream 587435 4049938 ~ 4083586 (+) False G103078
TU128841 lncRNA downstream 825520 4288023 ~ 4290680 (+) True G103137
TU128854 lncRNA downstream 975374 4437877 ~ 4438136 (+) True G103150
TU128863 lncRNA downstream 1073834 4536337 ~ 4594648 (+) False G103152
AMCG00010887 mRNA upstream 20353 3437321 ~ 3439509 (+) True AMCG00010887
AMCG00010888 mRNA upstream 32831 3421082 ~ 3427031 (+) True AMCG00010888
AMCG00010890 mRNA upstream 61970 3388255 ~ 3397892 (+) True AMCG00010890
AMCG00010889 mRNA upstream 73505 3349756 ~ 3386357 (+) True AMCG00010889
AMCG00010886 mRNA upstream 121446 3331761 ~ 3338416 (+) True AMCG00010886
AMCG00010897 mRNA downstream 86962 3549465 ~ 3550451 (+) True AMCG00010897
AMCG00010903 mRNA downstream 207952 3670455 ~ 3677090 (+) True AMCG00010903
AMCG00010905 mRNA downstream 368811 3831314 ~ 3835049 (+) True AMCG00010905
AMCG00010907 mRNA downstream 427460 3889963 ~ 3893566 (+) True AMCG00010907
AMCG00010906 mRNA downstream 453786 3916289 ~ 3946921 (+) True AMCG00010906
TU128618 other upstream 16328 3436618 ~ 3443534 (+) True G102947
TU128592 other upstream 31433 3426499 ~ 3428429 (+) False AMCG00010888
TU128578 other upstream 61356 3363267 ~ 3398506 (+) True G102921
TU128579 other upstream 61356 3371053 ~ 3398506 (+) False G102921
TU128580 other upstream 61356 3371053 ~ 3398506 (+) False G102921
TU128716 other downstream 114732 3577235 ~ 3580277 (+) True G103030
TU128774 other downstream 587435 4049938 ~ 4083586 (+) True G103078
TU128904 other downstream 1175929 4638432 ~ 4642358 (+) False AMCG00010922
TU129373 other downstream 3179480 6641983 ~ 6642628 (+) True G103542
TU129402 other downstream 3455263 6917766 ~ 6920931 (+) False AMCG00010990

Expression Profile