RNA id: TU128685


Basic Information

Item Value
RNA id TU128685
length 510
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G103006
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 3420888 ~ 3424769 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGTACGAAACATTTTCACATCCATTTATATTGAATCAACTGCCTCTCGCGAAGATATCAGAACATACGAGCTTTGCACCACattcttctcctctctcccaaACCTGAACACTCACCTGACATAAAGTTTCATGAGGTTTCTTCAAGTCCAGAATATTGAGGTTCCCGATCACAGGCCAGGCAGCCGGGCCGGGGGGGAACCTGTACACAGATGACTTGGATGGTTTGAAGAGAAAGTAGAAGAAGAAGGCTGTTGTTAAAATGAAGACCAGAGACACTGTGACAGTGTTCGCCAGCAGCACTGCGATCAGAGACATGTTTCCTTGGAGAGTTCCTCTTTGCCTATAGCTACACCTATACTCCTTCACCTGCTTATATACAGAGCTTAACCATTGTCTTGTACCTAGATCAATTGCTGGTTGTGTCCTTCTCCCTTTGCACACTAAGGCAGAGGTTACTACTGTGTGCCAAAGTATTCACAGATCGAATAATGCCTAAACCTTAAAACCAC

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016812 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides molecular_function

KEGG:

id description
ko00982 Drug metabolism - cytochrome P450
ko04610 Complement and coagulation cascades

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128569 lncRNA downstream 151119 3268542 ~ 3269769 (-) True G102920
TU128513 lncRNA downstream 259376 3161097 ~ 3161512 (-) True G102890
TU128512 lncRNA downstream 259991 3160583 ~ 3160897 (-) True G102889
TU128511 lncRNA downstream 260852 3159837 ~ 3160036 (-) True G102888
TU128510 lncRNA downstream 275201 3145264 ~ 3145687 (-) True G102887
TU128714 lncRNA upstream 129414 3554183 ~ 3559393 (-) False AMCG00010901
TU128741 lncRNA upstream 359488 3784257 ~ 3784631 (-) True G103050
TU128784 lncRNA upstream 713851 4138620 ~ 4139637 (-) True G103087
TU128793 lncRNA upstream 725730 4150499 ~ 4150917 (-) True G103094
TU128794 lncRNA upstream 727749 4152518 ~ 4152748 (-) True G103095
AMCG00010896 mRNA downstream 2510 3417149 ~ 3418378 (-) True AMCG00010896
AMCG00010895 mRNA downstream 93368 3321376 ~ 3327520 (-) True AMCG00010895
AMCG00010891 mRNA downstream 157424 3258943 ~ 3263464 (-) True AMCG00010891
AMCG00010883 mRNA downstream 211324 3190821 ~ 3209564 (-) True AMCG00010883
AMCG00010879 mRNA downstream 248899 3168425 ~ 3171989 (-) True AMCG00010879
AMCG00010893 mRNA upstream 17672 3442441 ~ 3450634 (-) True AMCG00010893
AMCG00010894 mRNA upstream 29154 3453923 ~ 3463743 (-) True AMCG00010894
AMCG00010892 mRNA upstream 49863 3474632 ~ 3483623 (-) True AMCG00010892
AMCG00010900 mRNA upstream 60772 3485541 ~ 3495838 (-) True AMCG00010900
AMCG00010898 mRNA upstream 74233 3499002 ~ 3507995 (-) True AMCG00010898
TU128662 other downstream 1712 3320813 ~ 3419176 (-) False G102990
TU128666 other downstream 1712 3416368 ~ 3419176 (-) True G102990
TU128675 other downstream 93329 3325858 ~ 3327559 (-) False AMCG00010895
TU128533 other downstream 238269 3179970 ~ 3182619 (-) True G102902
TU128333 other downstream 642865 2739816 ~ 2778023 (-) True G102762
TU128814 other upstream 745024 4169793 ~ 4185974 (-) True G103112
TU128916 other upstream 1217883 4642652 ~ 4650106 (-) True AMCG00010925
TU128994 other upstream 1709441 5134210 ~ 5140456 (-) False AMCG00010939
TU129184 other upstream 2280001 5704770 ~ 5748564 (-) True G103395
TU129762 other upstream 4546855 7971624 ~ 8019522 (-) False G103832

Expression Profile