RNA id: TU128841


Basic Information

Item Value
RNA id TU128841
length 2658
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G103137
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 4288023 ~ 4290680 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCACAGTAAATCAAAATGATGTTGAACCAAAATGGAGTACAGACtgaggttttacattttacattctcaCATTTACTTTCTCGTCATGTTCTAGGtcaaataaagttaataaaataaaggtgaCCGGTTTGTGTTGCCTGTCAAATATGCTGTGATTTTGTGTTGTACATATTCTGTATAAATTTAACTACTGTCGCTTTACAGGCTTAGAAACATGATAAAAAAAGACGGGGAATCCGCTGGTTGTGTCTCACACTTTATAAAAGACAGAAGACTTTTtcttgtatatatgttttatgtaagtaataaaatattactataacataaatataaatgcgACTTTGCAGTCTACATTTTGCaacaaacatacaacaaatgtagtAAACAAATCATTTGAAATCCACTGCAACAGAATCATTAAAGAGCTAAACCAAAAAAGCTCCAAAACAcattaaggaaataaatatagaaatggtCAAATTCATAAAtgaaatcatattaaaatatcttCTTGGAATATTAGTAAGTGTACAAAACTGtccagaaaaaagaaaaaaaataacagaacaaaaacaaaaccataaattcaaatacatatgtTTACATATTCGACATATTTACACATTGGAAAGAAATAAATTGGCAACTTTATAATCGGTTTTGTAAAAACTAAACATGTTTATCCTATAGCGTCGCTCAATGCAATTCCCATTGCTCGCCCCTGGACGTCAGGTTTGATGTTCAGCCCAATTGTAAACAGTAAAGCACATCATTATCAGGGCTCGgcttatatttttttcccttttattaagaaaacaaacaataaatatgtaatttacaaCTGATCCCttcattacatttcataaaaccCTTCCAATATACTCGGTAATGGAATGGTTTAGTAAAAGGAGAGAaacaaatcttttaaaataaggtttgatttttttatggAGGGGGTGGAACGCCGACCTGGGCATTTTAAGTTAGATacctgagttttttttttttttttttttctgcttcttttaaatgttacctCAAATACCTCCCTAATGGTTTGGGTAGACAGTAGACAGCGCAACTAGTCCAGAAAGATTGCAAACAGGAACATCATTcacacaattgaaaataaacGCATGCACAACCGAGGAGGGGACAAACATCAGACAGAAAATAAGTGCtccatgcaaataaacaaacaacaaacatatcGCATGTGTTTCCCGGATAAGTAAGTGTAGTGTCCCATTCAGTCGACTGTCTTGAACTTTCAACTATGCCAGCTGCGATGCTTAATAGACTGGGGGATTATTGGCAAAAGACTGCTGTCAGACAGAATTGCGAATAGcttctaaaaaatataattttaaataaagatttacctgcaacaaacaaacaaaacaaacacaggtttTCCAACACCATGGTGTATTGCAGTAGTCATCATTCTCAGTATCGTAGTGTTTATGTTTAAGAAcaagttgttaaaataaaaactgaaagttATACTTGTCATTAAAGCAGAGGCGCTAGAAGATTAAAAATCATAGACAAACGAAAAGATCACAACaattcatacaaaaaataatatatatatggacaacGACCTTGAGGAATAGAAAACCATTTGTGTCCACTGTCTGTGAGATTGGCATTGAAAGCGCTTTGTGGGAGAgattcctctttctttttcttttctgtaaatGGGGTTTAGCAGGTGGACATGGAGAAGAAATAGCCCGGCTGCGGCGCTTGTTCCCTTTAAACCCCGAGGAGGGTCCGATTCGCTATGATATCAGATCATTTGGTAAATACAGAGATGAATTTCACTTTTACGCGTGTGGATTCTTTCACAACATGACATTTTTACTgccccacacacaccacaatCCCGGTCACTGGCCATACTCACTCTGCAGTCTTTGCTAtgtccctttttctttttcttttctttttctttttttattataaatttgTAAATTCCATAgtcctgtttttttctatttgatttaaacaataGTTCATGAAAGCAGTCACTGTACTGAGGTCTGCAGTGTGTGGTGGAGAGGGGGGGTCTCTGCTTGTGAATATACATCCTCCATACTCGGGTGCGGGACCCCGGCGGGAGtcattcttttctctttctgtcttctGTTGCAAAACCAAACTCTCACAACTTCCTTTTCCAACTGCAGAGTCCCCGCCAGGCTGGTGATTTCGTGGGCAGAGGGTTTGGGACATTTTAAGAAGTGGTTCTCCAGGGCGCCCTTGACCCCGACCTCGATGGAGGTCCTCTTCTTGCGCTTCCTGCCCTGCGCGGCTATCTTGTCCAAATTCGTGGGGCTGCCCGTGTTGGAGTCGGTCTCCTCCAGCCACTTGTTTAGCAGCGGCTTAAGTTTGCACATGTTCTTGAAACTCAGCTGTAAGGCTTCAAACCTGCAGATGGTGGTCTGGGAAAACACGTTGCCATAAAGGGTGCCCAGAGCCAAGCCCACGTCCGCCTGCGTGAAGCCCAGCTTGATCCGCCGCTGCTTGAACTGCTTGGCAAACTGCTCCAGGTCGTCCGAGCTGGGCGCGTCCTCGTCCGAGTGGTCCTGGTGGTGGCTGAAGGGCTGCTGGGGGGACTCCAGCTGGTTGTCGTGGCTGCCTGCGTCTTCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128775 lncRNA upstream 204437 4049938 ~ 4083586 (+) False G103078
TU128721 lncRNA upstream 694616 3592668 ~ 3593407 (+) True G103035
TU128630 lncRNA upstream 825520 3459862 ~ 3462503 (+) True G102959
TU128615 lncRNA upstream 830366 3434919 ~ 3457657 (+) True G102945
TU128613 lncRNA upstream 854876 3432815 ~ 3433147 (+) True G102944
TU128854 lncRNA downstream 147197 4437877 ~ 4438136 (+) True G103150
TU128863 lncRNA downstream 245657 4536337 ~ 4594648 (+) False G103152
TU128866 lncRNA downstream 245657 4536337 ~ 4594648 (+) False G103152
TU128857 lncRNA downstream 302064 4592744 ~ 4596959 (+) True G103152
TU128860 lncRNA downstream 302064 4592744 ~ 4619656 (+) False G103152
AMCG00010916 mRNA upstream 37975 4239933 ~ 4250048 (+) True AMCG00010916
AMCG00010915 mRNA upstream 59095 4220702 ~ 4228928 (+) True AMCG00010915
AMCG00010912 mRNA upstream 112023 4171483 ~ 4176000 (+) True AMCG00010912
AMCG00010911 mRNA upstream 117015 4167178 ~ 4171008 (+) True AMCG00010911
AMCG00010913 mRNA upstream 137151 4138667 ~ 4150872 (+) True AMCG00010913
AMCG00010918 mRNA downstream 279420 4570100 ~ 4572543 (+) True AMCG00010918
AMCG00010922 mRNA downstream 343792 4634472 ~ 4642403 (+) True AMCG00010922
AMCG00010933 mRNA downstream 788528 5079208 ~ 5080356 (+) True AMCG00010933
AMCG00010941 mRNA downstream 861156 5151836 ~ 5156195 (+) True AMCG00010941
AMCG00010936 mRNA downstream 869330 5160010 ~ 5160444 (+) True AMCG00010936
TU128774 other upstream 204437 4049938 ~ 4083586 (+) True G103078
TU128716 other upstream 707746 3577235 ~ 3580277 (+) True G103030
TU128618 other upstream 844489 3436618 ~ 3443534 (+) True G102947
TU128592 other upstream 859594 3426499 ~ 3428429 (+) False AMCG00010888
TU128579 other upstream 889517 3371053 ~ 3398506 (+) False G102921
TU128904 other downstream 347752 4638432 ~ 4642358 (+) False AMCG00010922
TU129373 other downstream 2351303 6641983 ~ 6642628 (+) True G103542
TU129402 other downstream 2627086 6917766 ~ 6920931 (+) False AMCG00010990
TU129898 other downstream 4257683 8548363 ~ 8552605 (+) True G103939
TU130204 other downstream 5239794 9530474 ~ 9533414 (+) False AMCG00011076

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00020011 True 2870 mRNA 0.42 1 NC_007127.7 33593116 ~ 33595985 (+)
grasscarp (Ctenopharyngodon idella) CI01000027_10368925_10370031.mRNA True 2899 mRNA 0.46 1 CI01000027 10368407 ~ 10371305 (+)