RNA id: TU128857


Basic Information

Item Value
RNA id TU128857
length 2931
lncRNA type inter_gene
GC content 0.47
exon number 3
gene id G103152
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 4536337 ~ 4619656 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aattaaatgactttacacacacaattagacaaaaacacaccaagctgtagtttttaatgtatttattttttttcgcTCAACTAAACCTGTTAACACtacacaataaaaagaaaatctgtacaAAGAAAAGGTCGCTGTTTTTTGGTAAGATGTCCTCCAAAAGCCATCGATCGGTAGGTGTACATCGCTTCCATCAACCAAAGAAACTGCATCCACAATCCGATGTGATGGCATCGTCTGCTACAAAATGACAGCCTGTCCTCCCCCCCCAACTACCATAtgcatcaaatatatatatgtacacactacaattcaaataattccattatctaaaaacaaactgggggaaaataaaaatactgcatCATTGAGACAGAAGGCATTGCTATGACATTGTGGTCcttaaagtttgtttgcattgttaCAACTATACCTAAATGGCCTTTTTAAAACCCAGCTAGTCTTGGTTGGGGCTTTTAAACTTCAAGCTGCATTAATGCTGGCCTGAACAGAAAGCAGAGCATAACGTTTTAACTGAAGGTATACAAGGTAGTCTTGTTTACATTCGAGAGTATGATGTCATAGGGACATTTTCTTCAgactccaaaacaaaataagtcagTGATACCGTAGCACTCGAGAGGAGTGAAAACCAATACTGTTGGAATGTACTTCACGGGCAGGTATAACACTTTTACCCGTGTAAATACATTCcaaactacaacaaaataagtagaaaaatgacattcaattaatgtaaagtgtaagaaaaacaaaatacaaaccgaaaagaaaaagcatacaAACGTATCCAAACTGGGTTCACAGCGGTTTCACAAACACTGAGGTTTGTCAGAAGGACCTGGTCCCTGCAAAAAGCCTCAAACAAAATCTGTACACATGAATCCGTCTCTGAAGCCAGTCGTTCCTCTCTCGCCTCGTCGTGCCGTTTCAAGATCGGACTCTCCACTGGGGTACATTCAAACTGTCCCTTCCATCGCAAGCCCACGGCCCCCGCAGCAGGGCTTCAACACCAGGCCCAGCTTTCCGTTTTTGGTTGCGTCACACGTCTTAAAAGGGCCTGTATGCACATTTAAGAATCAGTCCTTTCCCAACTTGTGATTCTGCAGTTTATGATAACATGTTAAACaatccccccccctcccccctcccccaatctACACAAAAGCACAAGACCAGCCGTTTCCAGATCGTAGGAGAACAGAGCGACGTCGAGGTCTTGGGTCAGTATTCACCGAGAAGCAAGCGCTAAAAACCTGGTATATGCTTGAACCCTAAAGTTCAGATAAGTATTTCTACAGCATTAGAACAATCATTTAAAAGGATGAACTTCAATCTCGATATAGCGTGCGGTCCTCCCTTTCTTGGCCAGAGAAAGATCAAACAAAAACGAGGGGAAAACTGTACAAGTAACTGTAGTGCACTGAATTACAGAATCTGAAAAAGtatctacataaaaaaaaaagactatttGCAGAGTAAAAGGAAGGGAAGAATCCACATCTTCAGGGTGACCTCCGACATAAAAAAGGCTGCAGCAAAACCAGTGAATTTGGCAGGTTATAGAGAAGAGTCACAGTAGCAAAAGTTCGAAgccttggggtggggggggattcgctctctctctctctctctctctctctccagtgagCACTCTTTTAGTTTCCTTCTTTTTGGTAACATGGGCAGCAAATTTTTATCTTCCAGGAATTAAAAACGTGGATAAATCATGGCACCAGACagtttgcaaaaataaacaagaaaaaaagaggggggtggggggggagaagTACAGCAGCCATCTTGTCGAGGTGAGAGCCGGTACCTATCGACTGACGGGATCCTTCAAGAGACGTCTGCAAGAGAAGGAGAAATCGGATTAAATCGATGGCAGATGTAATCCGAGAGGGGAGGGGAACACTTAAGACATTTCAGTCTTTAACGTTAATGAATATACCCATACGGGACGTTTATACTTACAACTGGCCGGCCTCGCTCCGTATCGCCGCATGATCTGGTCTTGTGTGAATTTCACAAACGATTCATATTGTTCTGATTAAAaaggagagagggtgagagtcAACTGTAGCATCTCAACACACATCCAGGGACAGCACAGACTACAACCGATCAGATCAAATCTGTCAAATGGCACCTAGATCTCTGTTGCCGCTATCGGGGCCGGACTCTCAGCCCATCTCTGCCGTGCGACAAACGGGGAGGATTGAAGCACGGGAGCCAGGGCCGCTAAATCAAAAGGACAGGATGGGATGGTgtacgaggaggaggaggctgaCCGTGTGCATCCTCGGCAAAAGCCGGCACGttatggagggggggggggcgagaCACGGATGTTAGTAGTTGCCGACGGAGCCAGAACCCCTTGCCATACCTGCGAGCTTCGAGTTTAAGATCTGCTCGTACTCTTCACGGATCTTCTCTTCGTGGTCTTTGAGGAGCCGTTCGCACAGGAATCCCACCTGCCGCAACGTGAACGAGGGCTGGTCCTTCTTAACCGAGGGGGCACCTGGGGGGGGAGCTGGGCGAGGGGAGCGCAGCGCTGTGAGAGGGTCCGTCGCCCGAGCTGCCGCCCTCGCTCTGGTTGAAGGACACCTCCAGCTGCCGTCTCCTCTGGTAGCGGGTGTACTCCTGCTTGATGTTCTGAAAGATCTGTTCTgtaaaaagcagagagagagagaagagagatgaGATCGAGGAGCCGGTGCCTGTTCTGCGCCGTCTCGGCCGTGCCCCGGCACTCCCCCACACGAGGCGAGCGTCCAGCAGCTCGGATTATAAATCACACCAGCGTATCTGGAACAGCTCGAGGGCTGTCGGCGATAACTGATAGTTATTTACCTGGGAATCCATAGCGGAGGATTAAGAGAAGGGGGGATGCAATACCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128854 lncRNA upstream 154608 4437877 ~ 4438136 (+) True G103150
TU128841 lncRNA upstream 302064 4288023 ~ 4290680 (+) True G103137
TU128775 lncRNA upstream 509158 4049938 ~ 4083586 (+) False G103078
TU128721 lncRNA upstream 999337 3592668 ~ 3593407 (+) True G103035
TU128630 lncRNA upstream 1130241 3459862 ~ 3462503 (+) True G102959
TU128991 lncRNA downstream 537268 5134227 ~ 5140721 (+) True G103258
TU128992 lncRNA downstream 537268 5134227 ~ 5140721 (+) False G103258
TU129062 lncRNA downstream 756810 5353769 ~ 5355664 (+) True G103316
TU129094 lncRNA downstream 859399 5456358 ~ 5460573 (+) True G103333
TU129117 lncRNA downstream 953099 5550058 ~ 5613434 (+) True G103348
AMCG00010918 mRNA upstream 20201 4570100 ~ 4572543 (+) True AMCG00010918
AMCG00010916 mRNA upstream 342696 4239933 ~ 4250048 (+) True AMCG00010916
AMCG00010915 mRNA upstream 363816 4220702 ~ 4228928 (+) True AMCG00010915
AMCG00010912 mRNA upstream 416744 4171483 ~ 4176000 (+) True AMCG00010912
AMCG00010911 mRNA upstream 421736 4167178 ~ 4171008 (+) True AMCG00010911
AMCG00010922 mRNA downstream 37513 4634472 ~ 4642403 (+) True AMCG00010922
AMCG00010933 mRNA downstream 482249 5079208 ~ 5080356 (+) True AMCG00010933
AMCG00010941 mRNA downstream 554877 5151836 ~ 5156195 (+) True AMCG00010941
AMCG00010936 mRNA downstream 563051 5160010 ~ 5160444 (+) True AMCG00010936
AMCG00010935 mRNA downstream 569635 5166594 ~ 5169607 (+) True AMCG00010935
TU128774 other upstream 509158 4049938 ~ 4083586 (+) True G103078
TU128716 other upstream 1012467 3577235 ~ 3580277 (+) True G103030
TU128618 other upstream 1149210 3436618 ~ 3443534 (+) True G102947
TU128592 other upstream 1164315 3426499 ~ 3428429 (+) False AMCG00010888
TU128580 other upstream 1194238 3371053 ~ 3398506 (+) False G102921
TU128904 other downstream 41473 4638432 ~ 4642358 (+) False AMCG00010922
TU129373 other downstream 2045024 6641983 ~ 6642628 (+) True G103542
TU129402 other downstream 2320807 6917766 ~ 6920931 (+) False AMCG00010990
TU129898 other downstream 3951404 8548363 ~ 8552605 (+) True G103939
TU130204 other downstream 4933515 9530474 ~ 9533414 (+) False AMCG00011076

Expression Profile