Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU128991 |
| length | 2445 |
| lncRNA type | inter_gene |
| GC content | 0.36 |
| exon number | 6 |
| gene id | G103258 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CM030133.1 |
| NCBI id | CM030133.1 |
| chromosome length | 32682731 |
| location | 5134227 ~ 5140721 (+) |
| genome version | AmiCal1_2021_bowfin_Genome |
| species | bowfin (Amia calva) |
| id | name | namespace |
|---|---|---|
| GO:0019538 | protein metabolic process | biological_process |
| GO:0043603 | cellular amide metabolic process | biological_process |
| GO:0043604 | amide biosynthetic process | biological_process |
| GO:1901564 | organonitrogen compound metabolic process | biological_process |
| GO:1901566 | organonitrogen compound biosynthetic process | biological_process |
| GO:0009058 | biosynthetic process | biological_process |
| GO:0009059 | macromolecule biosynthetic process | biological_process |
| GO:0043043 | peptide biosynthetic process | biological_process |
| GO:1901576 | organic substance biosynthetic process | biological_process |
| GO:0006412 | translation | biological_process |
| GO:0010467 | gene expression | biological_process |
| GO:0044249 | cellular biosynthetic process | biological_process |
| GO:0044260 | cellular macromolecule metabolic process | biological_process |
| GO:0044267 | cellular protein metabolic process | biological_process |
| GO:0044271 | cellular nitrogen compound biosynthetic process | biological_process |
| GO:0006518 | peptide metabolic process | biological_process |
| GO:0043170 | macromolecule metabolic process | biological_process |
| GO:0034641 | cellular nitrogen compound metabolic process | biological_process |
| GO:0034645 | cellular macromolecule biosynthetic process | biological_process |
| id | description |
|---|---|
| ko03010 | Ribosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU128860 | lncRNA | upstream | 514571 | 4592744 ~ 4619656 (+) | False | G103152 |
| TU128857 | lncRNA | upstream | 537268 | 4592744 ~ 4596959 (+) | True | G103152 |
| TU128863 | lncRNA | upstream | 539579 | 4536337 ~ 4594648 (+) | False | G103152 |
| TU128866 | lncRNA | upstream | 539579 | 4536337 ~ 4594648 (+) | False | G103152 |
| TU128854 | lncRNA | upstream | 696091 | 4437877 ~ 4438136 (+) | True | G103150 |
| TU129062 | lncRNA | downstream | 213048 | 5353769 ~ 5355664 (+) | True | G103316 |
| TU129094 | lncRNA | downstream | 315637 | 5456358 ~ 5460573 (+) | True | G103333 |
| TU129117 | lncRNA | downstream | 409337 | 5550058 ~ 5613434 (+) | True | G103348 |
| TU129124 | lncRNA | downstream | 476337 | 5617058 ~ 5652821 (+) | True | G103354 |
| TU129125 | lncRNA | downstream | 483037 | 5623758 ~ 5645621 (+) | False | G103354 |
| AMCG00010933 | mRNA | upstream | 53871 | 5079208 ~ 5080356 (+) | True | AMCG00010933 |
| AMCG00010922 | mRNA | upstream | 491824 | 4634472 ~ 4642403 (+) | True | AMCG00010922 |
| AMCG00010918 | mRNA | upstream | 561684 | 4570100 ~ 4572543 (+) | True | AMCG00010918 |
| AMCG00010916 | mRNA | upstream | 884179 | 4239933 ~ 4250048 (+) | True | AMCG00010916 |
| AMCG00010915 | mRNA | upstream | 905299 | 4220702 ~ 4228928 (+) | True | AMCG00010915 |
| AMCG00010941 | mRNA | downstream | 11115 | 5151836 ~ 5156195 (+) | True | AMCG00010941 |
| AMCG00010936 | mRNA | downstream | 19289 | 5160010 ~ 5160444 (+) | True | AMCG00010936 |
| AMCG00010935 | mRNA | downstream | 25873 | 5166594 ~ 5169607 (+) | True | AMCG00010935 |
| AMCG00010943 | mRNA | downstream | 114374 | 5255095 ~ 5274132 (+) | True | AMCG00010943 |
| AMCG00010942 | mRNA | downstream | 143095 | 5283816 ~ 5284298 (+) | True | AMCG00010942 |
| TU128904 | other | upstream | 491869 | 4638432 ~ 4642358 (+) | False | AMCG00010922 |
| TU128774 | other | upstream | 1050641 | 4049938 ~ 4083586 (+) | True | G103078 |
| TU128716 | other | upstream | 1553950 | 3577235 ~ 3580277 (+) | True | G103030 |
| TU128618 | other | upstream | 1690693 | 3436618 ~ 3443534 (+) | True | G102947 |
| TU128592 | other | upstream | 1705798 | 3426499 ~ 3428429 (+) | False | AMCG00010888 |
| TU129373 | other | downstream | 1501262 | 6641983 ~ 6642628 (+) | True | G103542 |
| TU129402 | other | downstream | 1777045 | 6917766 ~ 6920931 (+) | False | AMCG00010990 |
| TU129898 | other | downstream | 3407642 | 8548363 ~ 8552605 (+) | True | G103939 |
| TU130204 | other | downstream | 4389753 | 9530474 ~ 9533414 (+) | False | AMCG00011076 |
| TU130349 | other | downstream | 5677967 | 10818688 ~ 10819423 (+) | True | G104273 |
