RNA id: TU129054


Basic Information

Item Value
RNA id TU129054
length 2526
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G103309
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 5331732 ~ 5334257 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atatatttatattatacacacatttaaccACTAGATGGAGATATTAGTCTAGTTGattgttactttttaatgtCCCTTTAGCTTCgttttccatttgaaattcaTTCAAACTTGACAgctgttttttggttgttgtttttttacccgTTCACTTCAATTCATAGCTTTATTCATTCCCTATGCCAACAGACAGAAAAGTAACCTTCGGTGTCTGAATAGAGAAACACAACTGTCAATGCTCACCGTACCGTTTGGTagagaaaaagcaaaaagctTCACGAACAGTATATTCTGCATGTAATTGTAATGTCTTGTTGTAAACGCTGGTTTGAAATCATTATCGGGTATTTTAGTGCTGTGATGTAACTGTCTTTATTTCCAAGCCTGCAGACTGAGGGAAGCTCCTGCCGGGCTCCCTGGCTTTACCGGCGGCCCAGTAGAACCAGCTGGTAACCAGGATTTCTTTGTTTATATCAGGGTGTGGATGTgcagtgtttttatatacatttctatataataataacactgtggTTCAGTGGCAGCTAGGTTACTTTTGAAGTTTTAACCTCGTTGGGAAAagctttaaagaagaaaaattgaaaggaatatcttgtacattttgtatatttgttttgcaattgtaaatagtattttgtgattgattttgtttttgttattgaaagGAAAACTCGTGTTTTTATAAGCTATGTTTCTGTGAATTGGATTTgggcgtgtgcgtgtgcgtgtgtgaaaaTACTGTAGATCCTTCCTGGCAAGGTGATTGAAAATCCTAACAGCACAAAGACGACTCGGCTGAGTTTTCTGCTCGGCTGTTGCACTGTGTTTCATCATGTGTTGAAAATGAAAGGTCTTTGGGGAATTTCTCTTCCATTTCAAAACTTGCGGCATTACCAATGGAAATCCTCACTGTGAGGTCTGAAACCACACTATAGAAACCAATAGCATTAGGATGTCTTTACATACGACTGGACTTCCAGAATTCtcttctattctattctatttttttttgcGGAATTATGATGAGACTTAATATATCAAAccacaaaatctgtttttttatatatatatatatattaatttccaCCATCTGAAACCAAATGGCCTTTAAAAATGGAAAGTATTGGCAACGGTAAATACTGTTGTTGGTTTCGAGGGGGGCAGGATTGCTAAGGTTGATCTCTGATCGTACAGGATCATCCTGAGATGACACGGCAGGCTTCACAGATGTGGGTAATTGCTGGGGGTTGACGGTATTCCAGACCCTGCTTTGCTGATGCTTTTTGTCTCCTTTCCCACTTCCTGAACGACGGGAAACGCATTGTGGCAGGTTGATGCCCTAATATTTTGACTGCAAATGTAATTAGGCTCACCTGTCACACATAAATGCCCCCCCTCTGATCCAGTCCTGCTTGGTAAAAACCTTGGAGTCACTCAAAGCGGCAACGCCGAGTCTTTGAGGTCAAACTCCAGGTTTGTTTTGGTCTCTGATTAGACTGCAGTGTTTAGCTTTAAGCCATTCCAGGTGCCAGTCAAATCATTTACAGAAGCTGATCAGTCTTggattgtgtttgattttgtaGGTTTAATGTTCAAGTAAAACCTTCAGTTTCTATGACGGGGGAACAATGGAACCCTTATACCCCCACCCTTCTCTCATTATATACCATCGGCAACGTTTGCCTGCATTCAGGAGATCAGACTGTGAATCCCTCAGGTCTGGTACTTTCTTCCAAAATGTGTTCATAATGTCggcatttgttttatatcacTCTGTGAAACGTAACAATATTTTTGATTCAGATCATGACCCCTCCACTAAATCGACATCATCCGCAAATTGATACAAGACAGAAATCCAattaaggaaaatgttttacagttttagtTGACTAAACTAAGACAGACACTTAAACTCTGTCCTTGGACCAAATGCAGAGCTAAACTTTTAGACAATGTCTTTGTTAGATCCACAGACTGAACTTCTGTAAATCCCAAACTAAGCGGACACTAGTCCGTTTTACATGACTGGGGACCTAGATTGGCTTTCCGTCTGTGTGAATGAAACCTACTTTGCCTTGAGCCCAGTGGCTAAGAGAATGGGACTAAATTGGCCTCTGACCAGaaaatggtaaattaaattTAGCACAACTTTCACATTGTACTGTACGTGACAGACTATGAATTCCACGGTCCTGAAGGAACATATGTCATTTTTAGTGTGTGTGATgagaaaaggtgtttttttgtttttgtttccatttgcttatttttagtaGCTTTAATAAACCCTTTGTAAAATTGTAcagaattttgtatttattaaagagATTTTTGTTCTTAGTATTTGTAGTGAAAGATGTCGTTTGCCCTCTTTTGTAATACtagtgatatttttttaaagaatgactGTATATCAAAACATGTGGCACTTActaatgttatgttttattttttgctcttgtaaaatgttgaaataaagtACTGAAGCCATGAATTTGAACCTGG

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component

KEGG:

id description
ko03030 DNA replication
ko04110 Cell cycle
ko04111 Cell cycle - yeast
ko04113 Meiosis - yeast

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU129052 lncRNA downstream 39832 5284330 ~ 5291900 (-) True AMCG00010946
TU128989 lncRNA downstream 202591 5115715 ~ 5129141 (-) True AMCG00010937
TU128990 lncRNA downstream 207445 5115715 ~ 5124287 (-) False AMCG00010937
TU128853 lncRNA downstream 906160 4425354 ~ 4425572 (-) True G103149
TU128794 lncRNA downstream 1178984 4152518 ~ 4152748 (-) True G103095
TU129082 lncRNA upstream 25718 5359975 ~ 5378226 (-) True G103329
TU129136 lncRNA upstream 224420 5558677 ~ 5615853 (-) True G103362
TU129231 lncRNA upstream 632682 5966939 ~ 5974307 (-) False AMCG00010966
TU129292 lncRNA upstream 1050224 6384481 ~ 6386604 (-) True G103473
TU129331 lncRNA upstream 1179606 6513863 ~ 6514123 (-) True G103503
AMCG00010946 mRNA downstream 6308 5291754 ~ 5325424 (-) False AMCG00010946
AMCG00010944 mRNA downstream 128101 5175899 ~ 5203631 (-) True AMCG00010944
AMCG00010938 mRNA downstream 182471 5141224 ~ 5149261 (-) True AMCG00010938
AMCG00010939 mRNA downstream 191223 5134053 ~ 5140509 (-) True AMCG00010939
AMCG00010937 mRNA downstream 203048 5117222 ~ 5128684 (-) False AMCG00010937
AMCG00010947 mRNA upstream 1589 5335846 ~ 5347367 (-) True AMCG00010947
AMCG00010945 mRNA upstream 19686 5353943 ~ 5355562 (-) True AMCG00010945
AMCG00010948 mRNA upstream 39602 5373859 ~ 5383129 (-) True AMCG00010948
AMCG00010949 mRNA upstream 66032 5400289 ~ 5410795 (-) True AMCG00010949
AMCG00010950 mRNA upstream 81275 5415532 ~ 5431128 (-) True AMCG00010950
TU128994 other downstream 191276 5134210 ~ 5140456 (-) False AMCG00010939
TU128916 other downstream 681626 4642652 ~ 4650106 (-) True AMCG00010925
TU128814 other downstream 1145758 4169793 ~ 4185974 (-) True G103112
TU128666 other downstream 1912556 3416368 ~ 3419176 (-) True G102990
TU128675 other downstream 2004173 3325858 ~ 3327559 (-) False AMCG00010895
TU129184 other upstream 370513 5704770 ~ 5748564 (-) True G103395
TU129762 other upstream 2637367 7971624 ~ 8019522 (-) False G103832
TU129989 other upstream 3485294 8819551 ~ 8863666 (-) False AMCG00011051
TU129988 other upstream 3520648 8854905 ~ 8863666 (-) False AMCG00011051
TU130111 other upstream 3900154 9234411 ~ 9236193 (-) False AMCG00011058

Expression Profile