RNA id: TU129094


Basic Information

Item Value
RNA id TU129094
length 4176
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G103333
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 5456358 ~ 5460573 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CATCAGCACCGCTTACCTGCAAGACTAAAGGCGTTGAAGGtaaacaggaaaagaaaatggaataaGTCTGCAAACTAACCCTGGTCCATAGAGCGAAGGTGCGACctacacacatgtatatttatacatggatattgatttaaaaagcaagaaCAGGTTGTTCTTTCTGTTGAGGACAATTCTAATGATGCTTAGATGCTTACTGCAAACTCCAATCTGCTTTGAGTGTCAGGCAGTGCATATACCAGCTGCATACTAATGTTCCCTTCACAGAACCTGCTggtataatataaatgtatatgattaaataaaaaacagcagtcTAGTGCTTTTGAGGGGAAGGGAGACAAGGGGGTGCTCCGTTAATGGATTGCtctttttctcctcttcctATTAATCTGGCAGATGCTCGGATACTCTGATCGTTGTAATGAAGGGAAAGTGGTATCCCGTAAATCAGGGGGATTGGTAAATATTTTGACAGACCACCttggccatttttttttttttgggggggggggNNNNNNNNNNGGTGAAGTTCATTTAAGGCTTCGACATTTGAACGTGTAAAGTCTTCACTTTTACATGATGCATTCTGgaaagggagggaaaaaaacatctgcactaTTTCACTATTGAGTCATTGCCAAGCAGACAAATTATATAATGTGGCAATGCAACTGCACATCTCTCAGTTCTGTACCCAAAATGTTGGAGAGTGCAGGTGCTGCTGCGGGAGTGTGTTAAATGCGCTAGTATGCGCCTGAGAGGCTGTTCGTGGCGGATTTGAACTGACTGCTGTGTTAGAGCCGTCTGCGTTACGGGGGTCAAAGGCTGAAGTCGGAGGCCAAGCAAAACAGCGGAAAATAGCACATAGAAAAGGGTAACCTATTAGAAGCAAACGTGTCATAACCGTTTTTAAAcgtacacaaatacataattagcTATTTCAACACAAAGTAACAGTTCTGCATTACAGCATGCACCTCAGATTGAAGAGTCCCAGAGGCTGCGATGCGCTTTCAGTTTGACCTACATATTGGAAACATTGCAGCGCATACTGTCCATCCCGTCAGTCCGCGCATTTCGCATTGCTCTCCGCCATCATTTACAAACACACGTATTATTTAGGATcggtgcatttattttttatcatcatATCAACCACAATATAGGGAACAATTGCAACAAATAAGAGATACTCTCACTAAACGTCTGCAAGGTAACAAGTACTGGGGACGGGTAGAATAAAATAACAGCGGGGCCTAGGCATGCAATAAAACCCGTGGGTTGCACAGGCACTAGTAAATGAcctcatattttattaataataacaattataattataattgaaaacataaatcTAGAAATGAAATATTAGCGCATTTCGTGTCCAGATCTGTCGATTCTATCCCTTTCAGGAGACGCGGGGTCTGATCGCACACATGAGCAGACAGGAGAGATGGCTGGATCAATGTGCGCATGCGCGCAGACCCCCCGGGCATGACAGCCTCGAGATTCACCCCGGCGAGCGGCGCGTGCGGTGCGGGGCGCAGGCACGTGCGGGGTCAGGGGTCATTCCCGCATTAACCATTTGCTGTCTGAGAAGAGGGGGGGCTGCTGCGACCCTCATAGTGACGAGCGGTTGACCGATTATAATGAGAAAAGAATAATTGCatgaggggggaaataaatcacAGGCACAATCTGTCCACTCAGCGGTGACAGATATCCCGAGGAGGGGCTCTGTGTTTGAAGTGATTGCACTGGCCTCTCATGCAGTCCGCAACCGGGATGCAgttgtgcatgtatatatgcattatacagatatacaagatatacatCTCACATGTCCTTGACGAAAGCATGCGATAAGCGGTATTATGACTGACCTGGCCGCCGCCGCAGGCCGCAGTCCAGCGCTGCTTCCCGGCACAGAAGACACTCACACTCCGTCACAAACATCCACAAACACTTCTCCGCTTTCCTGGTGTTTCCCGGGAGTAGCATCCCGACCAGACAGGACCTGAGCTGAGCCCcgatttatgattttttaacaGGCtagaacaataacaacaataatttttaaaatatacaacaacTAAATGTTAGCGCATGCGCTGCTGCTGGCTTCGCAAtgctacattatatatacaaatgtatcgAAACACGACACAACCATTACATTAACTGTTACATAAGCACATCCAAGTGAAGCTGGGAAACCGCCCGGGCCTGGCCTGTGTTTGTCACTTCAGTGAGCCCGCACTCTCTtctgtagtattattatattatagtattatattatagtattgtattgtattgtattgtattgtattatattgccCGTGTCGGCTCTCTGCTCACTCGCACGCTGTTCTCGCACTTTCGCTGCCGAAGGAAATGACGCAGATTTTGCGTCTCCCAGCCTTTAGCGGTGacttatttcatgttttttttaacttttaatgtcGTATTGTAGTTTTTTGGTTCACCATCTAGTGAATTAGattaggttttaatttatttaaaccacaTCCTAAATGTTACCATATGTAACTGTCCCAACATCGACACTaatttcaacacacacactttgaaaGGAGCCCATTGTTAGGCTAcagaagctgtgaaaatgtggggaaataatgataataaaaaatggaatgaaaaatacatacacgAGTTTATTAGTATAAAAATGGACGGGCAAATAAAAGCGCATTGACGTTTATTATCCCATGTAACTGCGTctacataatgtatttaaactacattctgttttacaataaatacatttaacaatgtGCTTTTTCAGCCGCCGCTTTGTGAAAAGCCTGTTTTATACCAGAAATAATGGCTTAGATCAATTAAGATACCTTCAATTAACATACCCTTCTGACAAAGTCAGGCTTTTCCGTTtctaataaagaaaaatcaaattaaaagtgattaaattaactttttttgtttgtttttaccacaatatattaaagaaacagGTGCTAACCAGCTACCTTTATCGTTATAAAGCAAATTACTATTTGCACATATGAAGGGATATCCTGTacttaatattatgtttttctgcaaacaaattatatatatagtgtctCGATGTCTATTTCTACCACATATAGtttctaaatatttgaaaacgACATGTTCTGCAACACTTGCCCTCATATATTTAATCATCattagatttaatttgttttaatttttcaaaaaaggggggaaaactCACTCTAATTCCTAATGTAAATGGGGGTCGGCTGAGGCTTTCCCAAGCGTAACTAATGGAAGGAGAAGATGGATGCATTTATGATAATTAGGGGTGTGAACATATCCATATAAATCCATAGAATAATAAGCGTGCAATTTGACTGATTATGTGCACATCGGATTGAAAATGAGAAACTGGATGTTAGAGGTTACCAGACAGCTGTTCCGCTGCAATTGTTTATATacgagtatatatatatatatatatagtagcagACCTGGGAAAAACCAATCGTTACATTAtatacactaatatatatatataagttaaaCTCTCTCAAGCAAGTTGATATTTCGAAGACCAAAAGACGACTGTTTGAAGGAGTaatcacaaaaaacaataattcatttCGTTaggtttgtatgtatttaaaataggtaaactgaaaaataagaaCTTGTATTAATTCTGTTAGGGGGAATAAACATAGAATACATAGAATCATCAGATCATTTCGTTGTGCCacagcaaatgaaaaataactcgACTGAAGCAGATATCATTTTTAAGATGAGTAACAAGActgcaaataatacatttaaaagagaataaatacatttaaaatggccattaattattaatattagtggATAATTAAATGCACAGATAGACAGAGCCACATAATTGTGTTCACATTTCTGTGTTTGCTGTGTTTGAAAGACACACAGGGATATCCAACATGGTGCAGATGTTGATGTGTGGCAGGTCCAGTTCAAGACTGTATTGCGCTGACGAAATGCAATTGGAACAGGTAGCTCTGAATACGCAGCAATAAAATCAATCTCCCGATGAAAGGAATAGCAGATTTAGCTGCTGGGTTGCTGTTCTGTAACACTGTGGATGCTGTGTCataatttgtgtctgtgttgaaTAAAATTCCAAAACCCCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU129062 lncRNA upstream 100694 5353769 ~ 5355664 (+) True G103316
TU128991 lncRNA upstream 315637 5134227 ~ 5140721 (+) True G103258
TU128992 lncRNA upstream 315637 5134227 ~ 5140721 (+) False G103258
TU128860 lncRNA upstream 836702 4592744 ~ 4619656 (+) False G103152
TU128857 lncRNA upstream 859399 4592744 ~ 4596959 (+) True G103152
TU129117 lncRNA downstream 89485 5550058 ~ 5613434 (+) True G103348
TU129124 lncRNA downstream 156485 5617058 ~ 5652821 (+) True G103354
TU129125 lncRNA downstream 163185 5623758 ~ 5645621 (+) False G103354
TU129132 lncRNA downstream 208552 5669125 ~ 5694122 (+) True G103360
TU129213 lncRNA downstream 502516 5963089 ~ 5965939 (+) True G103413
AMCG00010942 mRNA upstream 172060 5283816 ~ 5284298 (+) True AMCG00010942
AMCG00010943 mRNA upstream 182226 5255095 ~ 5274132 (+) True AMCG00010943
AMCG00010935 mRNA upstream 286751 5166594 ~ 5169607 (+) True AMCG00010935
AMCG00010936 mRNA upstream 295914 5160010 ~ 5160444 (+) True AMCG00010936
AMCG00010941 mRNA upstream 300163 5151836 ~ 5156195 (+) True AMCG00010941
AMCG00010951 mRNA downstream 43804 5504377 ~ 5511682 (+) True AMCG00010951
AMCG00010956 mRNA downstream 133360 5593933 ~ 5599868 (+) True AMCG00010956
AMCG00010957 mRNA downstream 139346 5599919 ~ 5601213 (+) True AMCG00010957
AMCG00010962 mRNA downstream 473525 5934098 ~ 5939360 (+) True AMCG00010962
AMCG00010963 mRNA downstream 489853 5950426 ~ 5959972 (+) True AMCG00010963
TU128904 other upstream 814000 4638432 ~ 4642358 (+) False AMCG00010922
TU128774 other upstream 1372772 4049938 ~ 4083586 (+) True G103078
TU128716 other upstream 1876081 3577235 ~ 3580277 (+) True G103030
TU128618 other upstream 2012824 3436618 ~ 3443534 (+) True G102947
TU128592 other upstream 2027929 3426499 ~ 3428429 (+) False AMCG00010888
TU129373 other downstream 1181410 6641983 ~ 6642628 (+) True G103542
TU129402 other downstream 1457193 6917766 ~ 6920931 (+) False AMCG00010990
TU129898 other downstream 3087790 8548363 ~ 8552605 (+) True G103939
TU130204 other downstream 4069901 9530474 ~ 9533414 (+) False AMCG00011076
TU130349 other downstream 5358115 10818688 ~ 10819423 (+) True G104273

Expression Profile