RNA id: TU129124


Basic Information

Item Value
RNA id TU129124
length 5328
lncRNA type inter_gene
GC content 0.42
exon number 5
gene id G103354
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 5617058 ~ 5652821 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

acttagTTAGGTTAATCATGACAATTACATCATGATTGTGAACAACCACCCCCCACCTGAGCAATCAAATTATTGTCATTAGAGCAGAGAGCTTAGGAGGTACCCCAATACCACAACAGAAGCAAAGAGTccacaaattaatgttttagttCTTCACATCGAGTGGAAATGCAGTTACGTACAGTAGGATTAGTGTTAAGAGATGCCCAATAGTGTCAATTAGGCAAGGAAAGGCTGAATCTCGTTTCAGATTTGCGCTCCTCTTTATTTACCAGTATATACAGGTGCTATAAATACAGGATCGTTTTGCATAAAATGTTCATGTATAAAATTACAGTACCTCTCATTACAATTGAAACacgatataaaaaaaatgtgatagttgatctatatatttatgcatcTCTAAATTTTGTTCCTCGTTTACAATAAACTAAAGGAATGATAAACTGTAAACTACCTGATGCAattcagtaaacaaaacaaaccaaagactAGGACACTTGGATAGAGTACATGCATGGTGGTCTAATACCAAGTAAAGTTCTTTGCAAATTGAAATTACAGTTCACTATCAAAAGCAAGGAATTCTCAATCCAGCTCCTCCCATTATCTTTCAAGGCCTTATTTTTTCTAACTTTGAACAGGACAGTGCTACAGTCATTTAATAACCCCTCCGCCCAATTCCAACTTCatgagagaggaagaaaaaatgaaaaacaaaacctccactaaaaaaaaaaaaaaagattcttcTATTGAGAAGTTCACAGTTTTTACAGTCTTCGagtggaaaaaataagttttggAAGGAATTGTAAATActaaaaactaaagcaaaaaaacatttgtactaGCTGAATGATGCTTGAGAATTTCACAAAGTGTAAAACTACTTCTGACTTAGTTCATTCTTGTATTGCAAAGGAAAAAGGCTGGTAGTGTTTCTGATTTAATGGGATTTCTGCAGACCTATTAGGTGACTGTTTTCCTCCCGAAGGTTATTCTCTTCCTCGGGAGGTGTGACCTATTCAGGCATAATGTGAACCCCACACCCCAAAAATATGCTTAGCAGAAACAATGGAAAATCACCATCAAAACCttgttacaaagaaaaaaaaactaatgtaaactctgaaatcatgttttattttagacaaACCTGAGCATTTCTAgctagatatatatagatatattccAGTTTCTTGTAAACAAAATTGCATACCACAGATTAAGACATTGAGGTGGGGAAAACCTAAACCTGAAAGAATAaaaggggaataaaataaaaacatcttaacGACTAAACTGACCTCTTTCAGCAGTCACAATCCTTTGGTAAGGATGTACGCGACTGTCATGTCTCCGGACTTTAGTTGCCATTGCTCCTAGATTGTAATAGGTCCACAGTATTAGAAagtaatttggaaaaaaaaacaaaaaacattataatatttacacatacattggcatatacaaaataacttatatatttcttatattaCAGACGTTtcacatataaaacacaaaacaaaacgtgTCACAGCTGTGTTCAGAGTTGATCCGTTTTGGTGATTTCGAGAGGAAAGCAGCTCGTCTATTTCTCAGTTTCCCAAGCAGGACTTACTGGAGGTGGGATGAGGCATGTTTTTAATcaactttcaaaaataaattaaaaagaaatcgAACACCGGTCACTGCAGGGAGACGGGCGCTTTTCACACGAaggaacagaaacacaaaatcgCCCAAAACAAATCCACTCCACAGCACCACAGGATTTAGACCTCAGTGGCATCCTCAAACACTGGAGGTTGCTACAAAAAAAGGCTTTTGATTCAGTTCCTCTGCTGGTGATAATGGTGGAATATATAGTCAAAACCAGTTGATATCACTCCTGTCAAAGTCACAATCTGCTTATTTCCATCAAGCGGGATTGTGCTGGTCCAAATATCATGCAAGGCAATGGGAAAACTCCCTATATGACTTGCCATAATGTGGTTAATATAAAATTTGTTTCAAGTGATCCCAAGTGGAATTCTCTTATCTGTGAATACTTCAGCCCATTTGGcctacctttttattttttacatcgTTATAATTTACTTCTGATTTACTCTGCTTATTGTTAGTGTTCTATAAGTCCCAGTAAAGTGATAGTAAAAGGTTTTGACTTTAGATATATTTAATCCTTTGAGATCTCTCTTTTATAAAACTTCTTTAAACATTCTCTGCATTTCatgtgggaaaaacaaaaataaatcggACACTCGTTTCCGATCCTCTCTGGGATTTCTATGCAGCTGGTTAACACTTTTAGACAAAGCGAGTTCTGCCAAGCATTGATTTTGAGAACAAAATCAGAAGTCAAAAACTGGTTCAACTCCCAGTTCAGCTGCCTGTTAAGAGCAAaaactttagttttttcttagCAAAATATGTGGGAGTGTCTTTGTGGAAAATGCCATAGAAGAATATTCAAAACAATGACTTAATGTTGGTGTAAAGGAAAACTATCTCCAGGGTGAGCAGGAAATTACATGTTTACTTGTTGGCATGAACAGGCCAGACATGCTCATGTACCGGCAGCTGTCCTGCAGTGAGCGAGGCCCACCCTAACAGAGGGCACAAAGGAGCCCGCAGCGATTCTGGTGAAAAGGGTTTAGAAACCCCAAAGACTTCAAAAAGTCAGCGTCTCGGGCTCAGCTGTACTCAGTTTGGCAGAACTCCTGTCAGTCTCCTCATTTCTCAAATCGCTCACAGCGTCTGAACTTTTTACGGGGCCTTATCAGGTTCCAAGCCATACTCTCCAACATCCATGCCTTGCCAACTACATTTTTTGCATCTTTTTCGATGCTAAAAGCGAGCAGACACGGCTTCTTTTGGACATCGCCGTCACTGGCTAGTGTCCTAGAGATGCACTTTTTCCACTCCGTCATCGCTAATCTAAACCAGGTCCCAGCTGTGTCAAGTTGTAAAGGGACCTGTTATATTGTCACTACGGCTACTTCTTTTTTGTCCTCTATATTTTTCAGCAGCAGCATTTTCACCACAGTGCCAGGAGACTGGAAAGCAGTCAAAGGGAATGTGTGAAGGTATCAACCCTAGGGTACCCAATGGTCAGGTGGCGGTAGTGCGTCTGTAAATCTAATCTCTGGAACTGCCTGCTACATTATGAGGATCCGAGTCTGTGCTGCTTCAAACCCCACTATAACCCACGGTCACCCAGACTGCCTTCCACACCGCCTCCCCTCTCCTCAGTGACTGAACAGAAAACAGGGAGCCAAAAAGGGGACGAGGCTGACAGACATTTAAAAGCTGCAagtctgaaatgtatattattcaaATGCGTCCCATTAAGTGGCCCATGCTGAGCTTTTACTTAAGTGAcggtgatttttttattttggtttgcaaACGGTCTCCAATTAGTCCACCCTGTTGGTTTTGCAAAAGGGTGCATTAAAATTTGTAAACTAGTGAATAAGTGATAAGCTGACTGTGGCTGCTCACGTCTCCAGCCAACATGGTGCCATCAGGGCAGCCTTGGAAAAGTgtttataaaaagtaaaaaaacaaaactccacAAGACTCTTCGAGTTGAAAAATGAACGTATGTATAAGGAATGTTTATTCTCTGCTCTAACAGTGGAACTGAACCTGCAGAGAGTACTTTAAGTTCAACTGTTCAAATGTTGCCCAAAACACTAACAGGGCTCCAGTGACAAAACCGGAAGGTGCTGATTAACAGCATCCAGAaagtgaaatacagaaaaaaataagttgttttcaAAGGGTACACCTTTTTATTTGATCTAAGTTGCATTTAACGCAATATGAAGAGTTCTATAACTGTGTATCgagtgtggggtgggggggcaatgtcggtttttcttttcttttctttttttaatagagTTCTGTAGATGTGACTGAATTAATGACTGAggctttgtgttgtttcattGGCTGGTAATGAGCTACAGTTACCACACAGTTACCACAGTGCACAACACATTGACAGCACAGCCCAAGCACCGCTAATGAGGAGTGTGAGAATCGGGTCTGACCAGGGGCTGTCTCACCACATCCttaaacagaatacataaaataataaataaaaaataaactcactGCAGTTCTCTTTCAAGTAGCTTCTGTTCAAACAGGCGAAAGCCAAAATAAGAAACTAAACTTAAATGAGTAACGGAGCTTCAACCACAAGGCCTTTACTGGAATCAGAACTGGCTAAGGAGGTGAGGGAAGAGATCAAGTTAGAGGCACAAAGTCTGTGGAGATCTGTTACGAGACCGAGTGtggcaattaaattaaagctgtGCGCGCACTTGGGGAAGGAGGAGGCAGAAGCAGGAGGCAGTCTTTAAACACAGGCTTTCATAGGTGAAGGTCTGTCGTTTCCCACAGGGCAATGAACGGCTGCTGGAATGTGGGAGAAAATGGCCAAAGAACAATGGaacgaaacaaaaacaaaaacattgcataCAGAATTTAGAGACACACGTCTGACCCACGCAAGGAGGTCAGACGGGGGAGGGGTTCCCCGCACAACAACCCTCAGCTCGAAACGATGTATTTACCTTTTAGCAAATCCTGCCCATGGCTCGAGGAGGTGTCCAAAACGCCACTGTACAACAAGCTGCCATCCTGTCCAGGGTTAATGACCGTCCCAAAGCCCCACGGACGCTTACCTAGAACGCCACTGTGGTCGATAGGGTACTCCAGCAGAGAGGTGGGGGCCAGGGCATACGGGTAATCGTAGGGTGTTGTGTAGATAATGCCACCATCGGGCGAGGGGGGCACTAAGGTTGGCGTTCCATTTGGCATCATCGTGGCCGTTTGGATGGGCcggatgatgttcatgatgggGGTCCCTGGTGTGGGGGGTCTCATGGCTTGGGGGGGCAAAACTTGACCATTGGGTGCAGCTATGAGCCTGGGGCCCTGCGCTGCCGCAGCAGCCGGTGTCTTGATGTTGGTGTCTCTGTATGTACCATTGAGAATTGCCAGCTCCATCAGCTGCATCTTCTTCAGGTTGTCTTCTCCCTCAGCCGCGGGCACTAGAAGCTTCTTGACCTCTTCCACTGCTCTTCTCATCTTGATCTCTGCTCTGGTCTGTGTGTCTTCCACCGTGATCAGAACGTgcaaatcctcatttaaatgctcCCAGTTGGGCTTGCCCCGGTTCTGTTCTTCCTTCTTCCTGTCCCTCATTGAGCTCTTTCCCCGGACCATGATTTTGCATCCAGTTTCTGCTTCCAGCTGTTTGGCAGTCAGTCCTCGTGGGCCCAGAATCCTCCCAACAAAGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU129117 lncRNA upstream 3624 5550058 ~ 5613434 (+) True G103348
TU129094 lncRNA upstream 156485 5456358 ~ 5460573 (+) True G103333
TU129062 lncRNA upstream 261394 5353769 ~ 5355664 (+) True G103316
TU128991 lncRNA upstream 476337 5134227 ~ 5140721 (+) True G103258
TU128992 lncRNA upstream 476337 5134227 ~ 5140721 (+) False G103258
TU129132 lncRNA downstream 16304 5669125 ~ 5694122 (+) True G103360
TU129213 lncRNA downstream 310268 5963089 ~ 5965939 (+) True G103413
TU129216 lncRNA downstream 310268 5963089 ~ 5965912 (+) False G103413
TU129220 lncRNA downstream 314696 5967517 ~ 5990587 (+) True G103416
TU129236 lncRNA downstream 374139 6026960 ~ 6029057 (+) True G103431
AMCG00010957 mRNA upstream 15845 5599919 ~ 5601213 (+) True AMCG00010957
AMCG00010956 mRNA upstream 17190 5593933 ~ 5599868 (+) True AMCG00010956
AMCG00010951 mRNA upstream 105376 5504377 ~ 5511682 (+) True AMCG00010951
AMCG00010942 mRNA upstream 332760 5283816 ~ 5284298 (+) True AMCG00010942
AMCG00010943 mRNA upstream 342926 5255095 ~ 5274132 (+) True AMCG00010943
AMCG00010962 mRNA downstream 281277 5934098 ~ 5939360 (+) True AMCG00010962
AMCG00010963 mRNA downstream 297605 5950426 ~ 5959972 (+) True AMCG00010963
AMCG00010967 mRNA downstream 324259 5977080 ~ 5977815 (+) True AMCG00010967
AMCG00010964 mRNA downstream 325029 5977850 ~ 5987680 (+) True AMCG00010964
AMCG00010969 mRNA downstream 382670 6035491 ~ 6051667 (+) True AMCG00010969
TU128904 other upstream 974700 4638432 ~ 4642358 (+) False AMCG00010922
TU128774 other upstream 1533472 4049938 ~ 4083586 (+) True G103078
TU128716 other upstream 2036781 3577235 ~ 3580277 (+) True G103030
TU128618 other upstream 2173524 3436618 ~ 3443534 (+) True G102947
TU128592 other upstream 2188629 3426499 ~ 3428429 (+) False AMCG00010888
TU129373 other downstream 989162 6641983 ~ 6642628 (+) True G103542
TU129402 other downstream 1264945 6917766 ~ 6920931 (+) False AMCG00010990
TU129898 other downstream 2895542 8548363 ~ 8552605 (+) True G103939
TU130204 other downstream 3877653 9530474 ~ 9533414 (+) False AMCG00011076
TU130349 other downstream 5165867 10818688 ~ 10819423 (+) True G104273

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00011347 False 1044 mRNA 0.56 8 NC_007124.7 3667233 ~ 3826370 (+)