RNA id: TU129292


Basic Information

Item Value
RNA id TU129292
length 2124
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G103473
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 6384481 ~ 6386604 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATTTGTTCTCTGAATCACTGGATagttaagatttgtttttgtaaaagttTCTATGTCTTCTGAATATccataaacaggaaaatatgtCCATAATAGGTGGTGTTAATGAATCACAGTGGTTATTGTTTTAGATTGAGTTATtggtgaattaaaatgtttgtaggTCACTGCCTGCTTCCCTTCTAAATATAAACTTGAATCTTGAGCAGGAGTTTTGCAGTATAGTGTTGAACACTCATGCTTGTTGAATCAAGACCTTCTCATTTATAATTTTCTGACAAGGCTGTAAATTACATCACTTTCTTCTGCTTTTAACCCCCCGCCCCCACAAGTAAACTACTTGACTCATGCTCTTTTTAGCCCTTTTAGTCTTCTGTGTAGCAGTAAGATCAATAATAAAAGTTGAAGATCAGTTTGCATTGTAGGAAacttttaattttctatttttaggTTTTCTTATTAATGAATTTGAGGCTGGAGGTGATTTAGTAGATTTTAACAGCTTTTGAGCagtgaaaccaaaaaaatatttttaatcttattaaCGGACTtagttaatttttaatttggttaGCAACTtaggaaaacatacatttgcagATTAAACTATAaagttattgatttaaattagcATTTCTCTAAATTATACTAGCTGTGTGGAGCAAAGAGGTCTGATTTGATGTAACCATTTTGTGATCTGACTAGACTTCACCATGGCCACAGAATACCAGTTTCAAAATAGACGCATCGTGGAACTGTGCAGTTGATCTAAATTTGGCATCCAAAATCACATGGTTTTTCCTGTTGTTGCATTTACAACcggaaagagaaaaaacactcATACTTCCAAGAATTATGTAagtatttactttttgtattttaactcCTTCCTTTTGTCACCTGACTATCTATCAGGGAAGCGTGCTTGAGGCTGCCCTGACCTGTCATGTCACGATGTCGACTTGCTAGGTGGGGGTCTGAGATGAAGATAGCATTTGGACTCCAGGgtaagaatgtattttaactgtaatttttttccctcatcTAGGttaacaaaagacaaaaactaaaacaaaaccacaaatcaCTACTGGTAACCTTGGGTGATGCAGGAAAAAAATGTGACGTACAAAAAAGACTCAACGTTTGGCTGTTGCAACAAATGTTTACTCTTGCAACCACGTCACACCTCACTATtgagcatttttacatttacttcaGCAAAGTTTCGAAGTTAATTCCAAGGTGGTGGAGCTCAATAAGCAATAGGAAATATTTTATAAGTTCACCTTTTAGTGGAAAGTTTTATGGCAGTCCTCTTTGGTTGACCATTAACAATTTTTCTTCACTGGCATATATTTGTTGAGTGATCTGTATATTTTACACCAGTtctagaaataaagaaaaataaattgtgacaAGCATAAAACCTCCATAATGAACTTTTACAGTCAATgtaaacaagattttttttttaaactattgacacttaattttatttgtgatgAGTAGAAAGTACTGATATGTTGTACTTTTCATCACATATTTCCACATTTCCGTTTTGTGAAATGCagttaaataagttaaaaaggCTAACTCATATCAcaagcaaaattattttataaaattcaAAAAAGGTGAGTAATATTGGCAAAggtacaatacatatatttttctccaAGGGATTGTGCAGTTAACGAGTTCCTCTTCTTAAAGACAATGCGGTAGAGGAGATTAATACTGACAAATACAGTCATCTTTACTTGACCGGACACATGAACAATGTCTTTGAACACTAAGATTTAATGTGCATTTTGGATAGTACTTCTcaattttatttggcttttAAATTTTTCAGCTGTTGGAAAAATAGGATTAATGACACTGCtacaaattgtaatttgttgagattattttttttaatggtcacttaaatgtaatatgtttttgaattGGTAATGATTTCACCAGTTCTCTAATACATTTGCTCTATCTGTTGTGATAAAGGATTAGAGAGTAGTTACAATTCATGTCTGATTGCAGTTGTAGGCAGGGATGCCTGTTTATTAACTTTTTCTCCTCCCCTTTTCCTCTGAAtgtcaataaaaatgaatgaactcCTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU129231 lncRNA downstream 410174 5966939 ~ 5974307 (-) False AMCG00010966
TU129136 lncRNA downstream 768628 5558677 ~ 5615853 (-) True G103362
TU129082 lncRNA downstream 1006255 5359975 ~ 5378226 (-) True G103329
TU129054 lncRNA downstream 1050224 5331732 ~ 5334257 (-) True G103309
TU129052 lncRNA downstream 1092581 5284330 ~ 5291900 (-) True AMCG00010946
TU129331 lncRNA upstream 127259 6513863 ~ 6514123 (-) True G103503
TU129370 lncRNA upstream 237477 6624081 ~ 6627452 (-) True G103539
TU129375 lncRNA upstream 241966 6628570 ~ 6628777 (-) False AMCG00010988
TU129387 lncRNA upstream 368689 6755293 ~ 6762139 (-) True G103556
TU129388 lncRNA upstream 373535 6760139 ~ 6762139 (-) False G103556
AMCG00010973 mRNA downstream 210546 6172808 ~ 6173935 (-) True AMCG00010973
AMCG00010970 mRNA downstream 306853 6074611 ~ 6077628 (-) True AMCG00010970
AMCG00010972 mRNA downstream 352057 6028880 ~ 6032424 (-) True AMCG00010972
AMCG00010971 mRNA downstream 369664 6003963 ~ 6014817 (-) True AMCG00010971
AMCG00010968 mRNA downstream 395202 5977922 ~ 5989279 (-) True AMCG00010968
AMCG00010975 mRNA upstream 7096 6393700 ~ 6398157 (-) True AMCG00010975
AMCG00010978 mRNA upstream 14022 6400626 ~ 6404255 (-) True AMCG00010978
AMCG00010980 mRNA upstream 27535 6414139 ~ 6415012 (-) True AMCG00010980
AMCG00010976 mRNA upstream 32778 6419382 ~ 6422777 (-) True AMCG00010976
AMCG00010977 mRNA upstream 36962 6423566 ~ 6442741 (-) True AMCG00010977
TU129184 other downstream 635917 5704770 ~ 5748564 (-) True G103395
TU128994 other downstream 1244025 5134210 ~ 5140456 (-) False AMCG00010939
TU128916 other downstream 1734375 4642652 ~ 4650106 (-) True AMCG00010925
TU128814 other downstream 2198507 4169793 ~ 4185974 (-) True G103112
TU128666 other downstream 2965305 3416368 ~ 3419176 (-) True G102990
TU129762 other upstream 1585020 7971624 ~ 8019522 (-) False G103832
TU129989 other upstream 2432947 8819551 ~ 8863666 (-) False AMCG00011051
TU129988 other upstream 2468301 8854905 ~ 8863666 (-) False AMCG00011051
TU130111 other upstream 2847807 9234411 ~ 9236193 (-) False AMCG00011058
TU130252 other upstream 3215280 9601884 ~ 9602741 (-) False AMCG00011084

Expression Profile