RNA id: TU129531


Basic Information

Item Value
RNA id TU129531
length 477
lncRNA type inter_gene
GC content 0.50
exon number 2
gene id G103658
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 7189085 ~ 7189583 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ggattttgtcctactcctctttgcagatcctctccaagtcattaaggttgcgaggctgacgtttggcaactcgaaccttcagctccctccacagattttctatgggattaaggtctggagactggctaggccactccaggaccttaatgtgcttcttcttgagccactcctttgttgccttggctgtgtgttttgggtcattgtcatgctggaatacccatccacgacccattttcaatgccctggctgagggaaggaggttctcacccaagatttgacggtacatggccccgtccatcatCTCTTTGAtacggtgcagttgtcctgtccccttagcagaaaaacacccccaaagcataatgtttccacctccatgtttgacggtggggatggtgttcttggggtcattcctcctcctccaaacacggcgagttgagttcgattttggtctcatctgaccacaacactttcacccag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU129516 lncRNA downstream 17280 7115984 ~ 7171805 (-) True G103645
TU129387 lncRNA downstream 426946 6755293 ~ 6762139 (-) True G103556
TU129388 lncRNA downstream 426946 6760139 ~ 6762139 (-) False G103556
TU129375 lncRNA downstream 560308 6628570 ~ 6628777 (-) False AMCG00010988
TU129370 lncRNA downstream 561633 6624081 ~ 6627452 (-) True G103539
TU129541 lncRNA upstream 41371 7230954 ~ 7233314 (-) True G103666
TU129712 lncRNA upstream 587425 7777008 ~ 7779941 (-) True G103794
TU129760 lncRNA upstream 748554 7938137 ~ 8027031 (-) False G103832
TU129758 lncRNA upstream 781368 7970951 ~ 7975247 (-) True G103832
TU129800 lncRNA upstream 866898 8056481 ~ 8056683 (-) True G103859
AMCG00010997 mRNA downstream 62719 7113635 ~ 7126366 (-) True AMCG00010997
AMCG00010992 mRNA downstream 250859 6925770 ~ 6938226 (-) True AMCG00010992
AMCG00010987 mRNA downstream 413579 6764826 ~ 6775506 (-) True AMCG00010987
AMCG00010988 mRNA downstream 544362 6628644 ~ 6644723 (-) True AMCG00010988
AMCG00010985 mRNA downstream 576333 6594655 ~ 6612752 (-) True AMCG00010985
AMCG00011003 mRNA upstream 119056 7308639 ~ 7309421 (-) True AMCG00011003
AMCG00011006 mRNA upstream 175659 7365242 ~ 7390566 (-) True AMCG00011006
AMCG00011005 mRNA upstream 203389 7392972 ~ 7408696 (-) True AMCG00011005
AMCG00011009 mRNA upstream 261486 7451069 ~ 7507166 (-) True AMCG00011009
AMCG00011008 mRNA upstream 339874 7529457 ~ 7551615 (-) True AMCG00011008
TU129184 other downstream 1440521 5704770 ~ 5748564 (-) True G103395
TU128994 other downstream 2048629 5134210 ~ 5140456 (-) False AMCG00010939
TU128916 other downstream 2538979 4642652 ~ 4650106 (-) True AMCG00010925
TU128814 other downstream 3003111 4169793 ~ 4185974 (-) True G103112
TU128666 other downstream 3769909 3416368 ~ 3419176 (-) True G102990
TU129762 other upstream 782041 7971624 ~ 8019522 (-) False G103832
TU129989 other upstream 1629968 8819551 ~ 8863666 (-) False AMCG00011051
TU129988 other upstream 1665322 8854905 ~ 8863666 (-) False AMCG00011051
TU130111 other upstream 2044828 9234411 ~ 9236193 (-) False AMCG00011058
TU130252 other upstream 2412301 9601884 ~ 9602741 (-) False AMCG00011084

Expression Profile