RNA id: TU129541


Basic Information

Item Value
RNA id TU129541
length 2361
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G103666
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 7230954 ~ 7233314 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttttcttcatttatttaacagtcACCAGATGATCGGATACATTctcttagaaaaaaaaagaaagaaaaagaaagaaaaaagaaaaaaacattgaaattgtttttttttttgttaaaaactatTATACAATATTCTCCTCAATATagattttatacaaaataaaaaaaaactcattaagGGAAAGAGAAGTGTGATCCAGTAATAAACACAGGATATGATGTGGAAGTCAGAGTACAAAGGGGGCTACCACACTTAGGAAGATAAAGACCcatcttttaattaataaataaatatttatatatatatatatgaatatgtatatatataaataacagggCAGTCTTTCTCAAGGTTTTTCCATTGAGATTTCTGTACACCAGTGTGCCACACACAGGAGCTCAACTGAAAGTGAGATAGGAACCTcaggaatttaattatatagaATCAGATCATGTAGATCTCAGACCTGACCATACACACGTGTGTTGTAAAGGTGGAACTGGGTGAAACATTTTAGAATAGAAAATTTGCATTTCTATTTGGGAAATATTTAGGGAATACTCTTTCCTGAGTGACTACCGTTAGGGCTTCATTATCACTGAAGAGGTacggactctctctctcagttgtGCTCGTTAGAACTCGGGAGAGGATTTCCCCAGGGTGAGGGAACACTGGAGCAGCAGCCACAGCCATTGGGTCACAGCTGACACAGTGTGGTGTTCAATAGAAATCACAGTCTGGAAGAGAAAACCTCCGCTCGTTTCATGGGGAATAACACAAGCACTGCAAAAAATTATCTCAACGGGCAAAATATCTCATTTTACatgacaaaaccaaacaaagaaatgataaataaataaaaaaacatggaaatacGAAAGACGAACCATGTTTTGCAGAGATTATGATCCACTAGCTGATTATTTTGCTTGATATGAAAACCTAGTGCACATCACCTGCAATTCCCAGTTATCTACAGTCTCACTGTATGTACTGTTAAATAGGTTGTCTCATTGTTCTTTCCACTCAGATTATGTGACCTCTCAACTAGCTTGGGAAATATAAATCTGAACAGAGGAAATTACATAGGAGGTATAGCAGTGTTGCTGAGCTTAAATCCTTTACAATTGATTGATGGGTTACAAAGTATCACAAATGAACACAAAGCTCCCTGACCCACTGATGAGGCACTGTCAGTTTAGGCTGGTGCAACACTGATATTCTTCCCCACATCACTTCCCCTTAGTCTATTTGAGTAGGCTTTATGTAAGTTGGACATTTTTGCAGAAATAGTCAACCTGGCCAAATTATAAACTAATTCAGGGGTATGTAACCACATCCATTTTATAGCAAGTTACAATCCCAATTGTGACACTGATTTTCAGCAGTAGGACCAATTAAGTGTTGATTGGtcaattcaataattaaaatacagggtGGCAGGTTGTGCGATTGTATGAAGGTTCCCTGCCTCCGAATTAACAAACGGTACAACACTCAGCAATGCAATAGCAGGACAATGCCCTCAGATTGCAAAGTTCACCGACAATGCATCTCTTGAGTGTGTTTACTTTTTGCTAGGTATAAGAAAAGTAAATCTTCGAAAGAAGAATATGGAAATTTGTGCAGTTTTCTGATTTTCAGACTTATTTCCAACCTTCAGGACAGTACCAGTTGACAGCATTCTGGACACAGTTCTACCACAGTAACACAGTCCCCTCACTcagcacatctagccactggttCCAAAAGTGCTGCATTAAATTTGCAATAATGATGCATCACTACTGCATCATGTTGAAGATTAAAAGCAAGACGCTGAATTTCAGTCGAGCACATTGATCTGCCTATAAGGAACGATCGTCAcagccacagacacacagttcaCTCGCATGAAACTAGTTGGAGAAAGGATTTTGCACAGCCCCTGGCCAAAAATATGAGCACCATCCCAGCCAAGAGATTTTCTGATTCTCAATgaggagatttattttttcataaatatgaagttaaaaaaaacagcctgtGCATATTAAAGTGACATTATGCAACATTTTTGCCTAAATGATTTTGCACAAAATATGATGTGCAAACATTTGTCTATGACtgtatgcatacatacagtgctatatatatatatatggctcaGAAGAGCCAGCTTCCCAACATTTcgatatgatttatatataaagtgcTTGAGAATTCAGGGCTGACAGGAGATGGGGCCGATGACACTGTGGAGGGTGGTGGTAGTTCTTTAGATTCCCAGCGTACGACTGaaccaacaaaccaaaaaaacagaacaaaatacaaacacaacggTACAATGGGGTTTGAAGCGCAGTGGTACATtttcac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU129531 lncRNA downstream 41371 7189085 ~ 7189583 (-) True G103658
TU129532 lncRNA downstream 41371 7189085 ~ 7189583 (-) False G103658
TU129516 lncRNA downstream 59149 7115984 ~ 7171805 (-) True G103645
TU129387 lncRNA downstream 468815 6755293 ~ 6762139 (-) True G103556
TU129388 lncRNA downstream 468815 6760139 ~ 6762139 (-) False G103556
TU129712 lncRNA upstream 543694 7777008 ~ 7779941 (-) True G103794
TU129760 lncRNA upstream 704823 7938137 ~ 8027031 (-) False G103832
TU129758 lncRNA upstream 737637 7970951 ~ 7975247 (-) True G103832
TU129800 lncRNA upstream 823167 8056481 ~ 8056683 (-) True G103859
TU129839 lncRNA upstream 934381 8167695 ~ 8167924 (-) True G103893
AMCG00010997 mRNA downstream 104588 7113635 ~ 7126366 (-) True AMCG00010997
AMCG00010992 mRNA downstream 292728 6925770 ~ 6938226 (-) True AMCG00010992
AMCG00010987 mRNA downstream 455448 6764826 ~ 6775506 (-) True AMCG00010987
AMCG00010988 mRNA downstream 586231 6628644 ~ 6644723 (-) True AMCG00010988
AMCG00010985 mRNA downstream 618202 6594655 ~ 6612752 (-) True AMCG00010985
AMCG00011003 mRNA upstream 75325 7308639 ~ 7309421 (-) True AMCG00011003
AMCG00011006 mRNA upstream 131928 7365242 ~ 7390566 (-) True AMCG00011006
AMCG00011005 mRNA upstream 159658 7392972 ~ 7408696 (-) True AMCG00011005
AMCG00011009 mRNA upstream 217755 7451069 ~ 7507166 (-) True AMCG00011009
AMCG00011008 mRNA upstream 296143 7529457 ~ 7551615 (-) True AMCG00011008
TU129184 other downstream 1482390 5704770 ~ 5748564 (-) True G103395
TU128994 other downstream 2090498 5134210 ~ 5140456 (-) False AMCG00010939
TU128916 other downstream 2580848 4642652 ~ 4650106 (-) True AMCG00010925
TU128814 other downstream 3044980 4169793 ~ 4185974 (-) True G103112
TU128666 other downstream 3811778 3416368 ~ 3419176 (-) True G102990
TU129762 other upstream 738310 7971624 ~ 8019522 (-) False G103832
TU129989 other upstream 1586237 8819551 ~ 8863666 (-) False AMCG00011051
TU129988 other upstream 1621591 8854905 ~ 8863666 (-) False AMCG00011051
TU130111 other upstream 2001097 9234411 ~ 9236193 (-) False AMCG00011058
TU130252 other upstream 2368570 9601884 ~ 9602741 (-) False AMCG00011084

Expression Profile